UHGV-0000146

Genome information

vOTU vOTU-019414

Genome length 34,251 bps

CDS count 54

Completeness 87.27% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000146
vOTU ID	vOTU-019414
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_3_1720__NODE_161_length_82528_cov_12.926866_1
BioSample	SAMEA4766000
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.37
Jumbo phage	No

Genome content
Genome length	34,251 bps
GC content	46.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.99%
Average CDS length	599.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000146_1	KOfam	K14059	int; integrase	NA
UHGV-0000146_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0000146_1	UniRef90	UniRef90_A0A6N7X4W3	Site-specific integrase	NA
UHGV-0000146_1	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-0000146_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0000146_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0000146_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0000146_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0000146_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0000146_2	UniRef90	UniRef90_A0A6N7XL59	Helix-turn-helix domain-containing protein	NA
UHGV-0000146_2	eggNOG-mapper	936375.HMPREF1152_0654	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0000146_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000146_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0000146_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0000146_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0000146_3	UniRef90	UniRef90_A0A174QJI6	XRE family transcriptional regulator	NA
UHGV-0000146_3	eggNOG-mapper	1163671.JAGI01000002_gene2855	NA	NA
UHGV-0000146_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0000146_6	PHROG	phrog_6058	NA	unknown function
UHGV-0000146_6	UniRef90	UniRef90_R5J5Y6	Modification methylase SinI	NA
UHGV-0000146_6	eggNOG-mapper	1111454.HMPREF1250_0785	NA	NA
UHGV-0000146_6	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0000146_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0000146_9	UniRef90	UniRef90_A0A6N7XL54	YqaJ viral recombinase family protein	NA
UHGV-0000146_9	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0000146_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0000146_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0000146_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0000146_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0000146_10	PHROG	phrog_674	NA	unknown function
UHGV-0000146_10	UniRef90	UniRef90_A0A6N7XHF2	NA	NA
UHGV-0000146_10	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0000146_10	Pfam	PF07083	NA	DUF1351
UHGV-0000146_10	Structural annotation	PF07083	NA	NA
UHGV-0000146_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0000146_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0000146_11	UniRef90	UniRef90_A0A6N7X4V7	Recombinase	NA
UHGV-0000146_11	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0000146_11	Pfam	PF03837	RecT family	RecT
UHGV-0000146_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0000146_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0000146_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0000146_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0000146_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000146_12	UniRef90	UniRef90_A0A6N7XL53	Single-stranded DNA-binding protein	NA
UHGV-0000146_12	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0000146_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0000146_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0000146_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0000146_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0000146_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0000146_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0000146_14	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0000146_14	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0000146_14	Pfam	PF06356	NA	DUF1064
UHGV-0000146_14	Structural annotation	PF06356	NA	NA
UHGV-0000146_18	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0000146_18	UniRef90	UniRef90_R5HZ90	DNA replication protein	NA
UHGV-0000146_18	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0000146_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0000146_18	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0000146_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0000146_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0000146_19	UniRef90	UniRef90_A0A6N7X559	AAA family ATPase	NA
UHGV-0000146_19	eggNOG-mapper	665950.HMPREF1025_02330	IstB-like ATP binding protein	NA
UHGV-0000146_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0000146_19	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0000146_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0000146_19	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0000146_20	PHROG	phrog_474	phosphofructokinase	other
UHGV-0000146_20	UniRef90	UniRef90_UPI001D174B3C	NA	NA
UHGV-0000146_20	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0000146_20	Pfam	PF19905	NA	DUF6378
UHGV-0000146_20	Structural annotation	PF19905	NA	NA
UHGV-0000146_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0000146_22	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0000146_22	eggNOG-mapper	1286171.EAL2_c19860	sigma factor activity	NA
UHGV-0000146_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0000146_22	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0000146_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0000146_23	UniRef90	UniRef90_UPI001F2A4213	terminase small subunit	NA
UHGV-0000146_23	eggNOG-mapper	1313172.YM304_41530	HNH endonuclease	NA
UHGV-0000146_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0000146_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0000146_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0000146_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0000146_24	UniRef90	UniRef90_A0A412ZSM6	Terminase small subunit	NA
UHGV-0000146_24	eggNOG-mapper	1408823.AXUS01000024_gene2711	terminase, small subunit	NA
UHGV-0000146_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0000146_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0000146_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0000146_25	PHROG	phrog_1233	NA	unknown function
UHGV-0000146_25	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0000146_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0000146_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0000146_26	UniRef90	UniRef90_A0A6N7XL45	PBSX family phage terminase large subunit	NA
UHGV-0000146_26	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0000146_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0000146_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0000146_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0000146_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0000146_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0000146_28	Structural annotation	PF03422	NA	NA
UHGV-0000146_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0000146_31	UniRef90	UniRef90_A0A6N7X7T0	Phage portal protein	NA
UHGV-0000146_31	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0000146_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0000146_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0000146_32	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0000146_32	UniRef90	UniRef90_A0A6N7X541	Phage_Mu_F domain-containing protein	NA
UHGV-0000146_32	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0000146_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0000146_32	COG	COG2369	NA	NA
UHGV-0000146_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0000146_34	PHROG	phrog_3675	NA	unknown function
UHGV-0000146_34	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0000146_34	eggNOG-mapper	1321784.HMPREF1987_01070	YjcQ protein	NA
UHGV-0000146_34	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0000146_34	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0000146_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0000146_35	UniRef90	UniRef90_A0A1C5PQA6	Phage minor structural protein GP20	NA
UHGV-0000146_35	eggNOG-mapper	279808.SH2355	Phage minor structural protein GP20	NA
UHGV-0000146_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0000146_35	Structural annotation	PF06810	NA	NA
UHGV-0000146_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0000146_36	UniRef90	UniRef90_A0A6N7XHD6	Phage capsid protein	NA
UHGV-0000146_36	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0000146_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0000146_38	PHROG	phrog_1236	head protein	head and packaging
UHGV-0000146_38	UniRef90	UniRef90_A0A6N7XL36	Phage gp6-like head-tail connector protein	NA
UHGV-0000146_38	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0000146_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0000146_38	Structural annotation	PF05135	NA	NA
UHGV-0000146_39	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0000146_39	UniRef90	UniRef90_A0A6N7XKR1	Head-tail adaptor protein	NA
UHGV-0000146_39	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0000146_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0000146_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0000146_40	UniRef90	UniRef90_A0A6N7XI87	HK97 gp10 family phage protein	NA
UHGV-0000146_40	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0000146_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0000146_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0000146_41	PHROG	phrog_957	head protein	head and packaging
UHGV-0000146_41	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0000146_41	Structural annotation	PF12691	NA	NA
UHGV-0000146_42	PHROG	phrog_885	major tail protein	tail
UHGV-0000146_42	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0000146_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0000146_44	PHROG	phrog_1021	NA	unknown function
UHGV-0000146_44	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0000146_46	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-0000146_46	UniRef90	UniRef90_A0A6N7XHC7	Tape measure protein	NA
UHGV-0000146_46	eggNOG-mapper	1235792.C808_05348	tape measure	NA
UHGV-0000146_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0000146_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0000146_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0000146_46	Structural annotation	PF20155, TIGR01760, NF011901	NA	NA
UHGV-0000146_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0000146_47	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0000146_47	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0000146_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0000146_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0000146_48	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-0000146_48	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0000146_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0000146_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0000146_49	PHROG	phrog_9994	NA	unknown function
UHGV-0000146_49	eggNOG-mapper	469378.Ccur_02620	NA	NA
UHGV-0000146_49	Structural annotation	PF20747	NA	NA
UHGV-0000146_51	PHROG	phrog_2310	NA	unknown function
UHGV-0000146_52	PHROG	phrog_443	holin	lysis
UHGV-0000146_52	UniRef90	UniRef90_UPI0004297457	holin	NA
UHGV-0000146_52	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0000146_52	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0000146_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0000146_53	PHROG	phrog_435	endolysin	lysis
UHGV-0000146_53	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0000146_53	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0000146_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0000146_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0000146_53	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0000146_54	PHROG	phrog_1863	NA	unknown function
UHGV-0000146_54	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA