UHGV-0000564

Genome information

vOTU vOTU-020420

Genome length 26,752 bps

CDS count 44

Completeness 83.09% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000564
vOTU ID	vOTU-020420
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_L_13_1278__NODE_351_length_51525_cov_9.774568_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.9
Jumbo phage	No

Genome content
Genome length	26,752 bps
GC content	58.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.80%
Average CDS length	580.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000564_1	PHROG	phrog_19280	NA	unknown function
UHGV-0000564_1	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0000564_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0000564_2	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0000564_3	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0000564_3	UniRef90	UniRef90_UPI00189F9F74	phage tail protein	NA
UHGV-0000564_3	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0000564_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0000564_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0000564_3	COG	COG4926	Phage-related protein	NA
UHGV-0000564_4	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0000564_4	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0000564_4	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0000564_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0000564_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0000564_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0000564_4	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0000564_5	PHROG	phrog_23464	NA	unknown function
UHGV-0000564_5	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0000564_5	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0000564_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0000564_5	Structural annotation	COG5280	NA	NA
UHGV-0000564_6	Structural annotation	PF12363	NA	NA
UHGV-0000564_7	PHROG	phrog_88	major tail protein	tail
UHGV-0000564_7	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0000564_7	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0000564_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0000564_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0000564_8	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0000564_8	Structural annotation	PF05657	NA	NA
UHGV-0000564_9	UniRef90	UniRef90_UPI00082989AC	HK97 gp10 family phage protein	NA
UHGV-0000564_9	eggNOG-mapper	393480.FNP_1691	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0000564_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0000564_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0000564_10	UniRef90	UniRef90_B6GDI0	Putative phage head-tail adaptor	NA
UHGV-0000564_10	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0000564_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0000564_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0000564_11	PHROG	phrog_5223	neck protein	connector
UHGV-0000564_11	UniRef90	UniRef90_B6GDI1	Putative phage DNA packaging protein	NA
UHGV-0000564_11	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0000564_11	Structural annotation	TIGR01560	NA	NA
UHGV-0000564_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0000564_12	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0000564_12	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0000564_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0000564_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0000564_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0000564_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0000564_13	KOfam	K06904	NA	NA
UHGV-0000564_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0000564_13	UniRef90	UniRef90_UPI00189D4AF0	HK97 family phage prohead protease	NA
UHGV-0000564_13	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0000564_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0000564_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0000564_13	COG	COG3740	Phage head maturation protease	NA
UHGV-0000564_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0000564_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0000564_14	UniRef90	UniRef90_A0A4S2F4F4	Phage portal protein	NA
UHGV-0000564_14	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0000564_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0000564_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0000564_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0000564_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0000564_15	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-0000564_15	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0000564_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0000564_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0000564_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0000564_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0000564_16	PHROG	phrog_1066	NA	unknown function
UHGV-0000564_16	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0000564_16	Structural annotation	TIGR01558	NA	NA
UHGV-0000564_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0000564_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0000564_17	UniRef90	UniRef90_A0A1Y4G539	HNHc domain-containing protein	NA
UHGV-0000564_17	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0000564_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0000564_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0000564_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0000564_18	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0000564_18	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0000564_19	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0000564_19	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0000564_19	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0000564_19	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0000564_19	Pfam	PF00692	dUTPase	dUTPase
UHGV-0000564_19	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0000564_19	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0000564_19	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0000564_20	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0000564_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0000564_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000564_21	UniRef90	UniRef90_R7DAW4	Single-stranded DNA-binding protein	NA
UHGV-0000564_21	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0000564_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0000564_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0000564_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0000564_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0000564_21	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0000564_22	PHROG	phrog_12588	NA	unknown function
UHGV-0000564_23	PHROG	phrog_21723	NA	unknown function
UHGV-0000564_23	UniRef90	UniRef90_A0A7K3KYW0	Integration host factor	NA
UHGV-0000564_23	eggNOG-mapper	1033730.CAHG01000016_gene599	integration host factor	NA
UHGV-0000564_23	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0000564_23	COG	COG0099	Ribosomal protein S13	NA
UHGV-0000564_23	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0000564_26	KOfam	K14059	int; integrase	NA
UHGV-0000564_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0000564_26	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0000564_26	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0000564_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0000564_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0000564_26	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0000564_29	PHROG	phrog_1454	NA	unknown function
UHGV-0000564_29	eggNOG-mapper	1460634.JCM19037_4158	NA	NA
UHGV-0000564_31	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0000564_31	UniRef90	UniRef90_UPI001C3C4347	NA	NA
UHGV-0000564_31	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0000564_31	Pfam	PF11753	NA	DUF3310
UHGV-0000564_32	PHROG	phrog_24658	NA	unknown function
UHGV-0000564_32	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0000564_35	PHROG	phrog_24189	NA	unknown function
UHGV-0000564_35	UniRef90	UniRef90_R7D7E6	NA	NA
UHGV-0000564_35	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0000564_35	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0000564_35	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0000564_37	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0000564_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0000564_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0000564_41	UniRef90	UniRef90_A0A1Y4G4T6	HTH cro/C1-type domain-containing protein	NA
UHGV-0000564_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000564_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0000564_41	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0000564_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0000564_42	UniRef90	UniRef90_UPI001C3E806F	helix-turn-helix transcriptional regulator	NA
UHGV-0000564_42	eggNOG-mapper	471855.Shel_15940	sequence-specific DNA binding	NA
UHGV-0000564_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000564_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0000564_42	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0000564_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0000564_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0000564_44	UniRef90	UniRef90_UPI0013A61849	recombinase family protein	NA
UHGV-0000564_44	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0000564_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0000564_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0000564_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0000564_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0000564_44	Structural annotation	PF00239, NF041201, COG2452	NA	NA