UHGV-0000722

Genome information

Genome length 32,596 bps

CDS count 51

Completeness 94.70% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000722
vOTU ID	vOTU-071454
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_7_1773__NODE_1013_length_58073_cov_16.901459_1
BioSample	SAMEA4766032
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.2
Jumbo phage	No

Genome content
Genome length	32,596 bps
GC content	38.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.22%
Average CDS length	585.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000722_1	PHROG	phrog_881	holin	lysis
UHGV-0000722_1	UniRef90	UniRef90_UPI0008719737	phage holin	NA
UHGV-0000722_1	eggNOG-mapper	1140001.I571_01849	Putative phage holin Dp-1	NA
UHGV-0000722_1	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0000722_1	Structural annotation	PF16938	NA	NA
UHGV-0000722_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0000722_3	PHROG	phrog_291	endolysin	lysis
UHGV-0000722_3	UniRef90	UniRef90_UPI000414A751	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0000722_3	eggNOG-mapper	1123263.AUKY01000015_gene1625	lyzozyme M1	NA
UHGV-0000722_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0000722_3	Pfam	PF01476	LysM domain	LysM
UHGV-0000722_3	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0000722_3	COG	COG1388	LysM repeat	NA
UHGV-0000722_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0000722_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0000722_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0000722_7	UniRef90	UniRef90_A0A1M7SMD9	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0000722_7	eggNOG-mapper	665956.HMPREF1032_00691	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0000722_7	PADLOC	drt-UG3	DRT	DRT
UHGV-0000722_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0000722_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0000722_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0000722_8	PHROG	phrog_5302	tail protein	tail
UHGV-0000722_8	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0000722_8	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-0000722_8	Structural annotation	COG1262	NA	NA
UHGV-0000722_9	PHROG	phrog_19280	NA	unknown function
UHGV-0000722_9	UniRef90	UniRef90_UPI000C854EB7	BppU family phage baseplate upper protein	NA
UHGV-0000722_10	PHROG	phrog_372	tail protein	tail
UHGV-0000722_10	UniRef90	UniRef90_UPI001E5C78A4	NA	NA
UHGV-0000722_10	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0000722_10	Pfam	PF05895	NA	DUF859
UHGV-0000722_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0000722_10	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-0000722_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0000722_11	UniRef90	UniRef90_A0A412PAL3	Prophage_tail domain-containing protein	NA
UHGV-0000722_11	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0000722_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0000722_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0000722_11	COG	COG4926	Phage-related protein	NA
UHGV-0000722_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0000722_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0000722_12	UniRef90	UniRef90_A0A845QU54	Phage tail protein	NA
UHGV-0000722_12	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0000722_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0000722_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0000722_13	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0000722_13	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-0000722_13	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0000722_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0000722_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0000722_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0000722_13	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0000722_14	PHROG	phrog_1633	NA	unknown function
UHGV-0000722_14	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0000722_14	eggNOG-mapper	1321820.HMPREF1983_00925	NA	NA
UHGV-0000722_14	Structural annotation	PF17318	NA	NA
UHGV-0000722_15	PHROG	phrog_1526	NA	unknown function
UHGV-0000722_15	eggNOG-mapper	938278.CAJO01000051_gene781	NA	NA
UHGV-0000722_16	PHROG	phrog_117	major tail protein	tail
UHGV-0000722_16	UniRef90	UniRef90_A0A356C4M0	Phage tail protein	NA
UHGV-0000722_16	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0000722_16	COG	COG5492	NA	NA
UHGV-0000722_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0000722_17	PHROG	phrog_123	tail terminator	connector
UHGV-0000722_17	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0000722_17	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0000722_17	Structural annotation	PF06141	NA	NA
UHGV-0000722_18	PHROG	phrog_387	neck protein	connector
UHGV-0000722_18	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0000722_18	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0000722_19	PHROG	phrog_501	head closure Hc1	connector
UHGV-0000722_19	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0000722_19	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0000722_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0000722_20	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0000722_20	UniRef90	UniRef90_E7MNZ3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0000722_20	eggNOG-mapper	706433.HMPREF9430_01264	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0000722_20	Pfam	PF09355	NA	Phage_Gp19
UHGV-0000722_20	Structural annotation	PF09355	NA	NA
UHGV-0000722_22	PHROG	phrog_32396	NA	unknown function
UHGV-0000722_22	UniRef90	UniRef90_A0A7X2NQN8	Phage major capsid protein	NA
UHGV-0000722_22	eggNOG-mapper	706433.HMPREF9430_01265	Phage capsid family	NA
UHGV-0000722_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0000722_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0000722_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0000722_23	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0000722_23	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0000722_23	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0000722_23	Structural annotation	PF14265	NA	NA
UHGV-0000722_24	PHROG	phrog_17688	NA	unknown function
UHGV-0000722_24	UniRef90	UniRef90_E7MNZ6	Putative phage terminase, large subunit	NA
UHGV-0000722_24	eggNOG-mapper	706433.HMPREF9430_01267	phage terminase, large subunit	NA
UHGV-0000722_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0000722_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0000722_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0000722_25	PHROG	phrog_3675	NA	unknown function
UHGV-0000722_25	UniRef90	UniRef90_U2JT34	YjcQ protein	NA
UHGV-0000722_25	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-0000722_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0000722_25	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0000722_26	PHROG	phrog_3675	NA	unknown function
UHGV-0000722_26	UniRef90	UniRef90_U7UKH4	YjcQ protein	NA
UHGV-0000722_26	eggNOG-mapper	1111134.HMPREF1253_1941	YjcQ protein	NA
UHGV-0000722_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0000722_26	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0000722_27	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0000722_27	UniRef90	UniRef90_A0A1C5Y960	CdiA_C domain-containing protein	NA
UHGV-0000722_27	eggNOG-mapper	403905.A7J293_9CAUD	Phage Mu protein F like protein	NA
UHGV-0000722_27	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0000722_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0000722_28	UniRef90	UniRef90_A0A890GW77	Phage portal protein	NA
UHGV-0000722_28	eggNOG-mapper	706433.HMPREF9430_01270	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0000722_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0000722_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0000722_29	UniRef90	UniRef90_A0A7X2TEG9	HNH endonuclease	NA
UHGV-0000722_29	eggNOG-mapper	706433.HMPREF9430_01271	HNH endonuclease domain protein	NA
UHGV-0000722_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0000722_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0000722_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0000722_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0000722_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0000722_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000722_32	UniRef90	UniRef90_A0A3P1S1N3	Single-stranded DNA-binding protein	NA
UHGV-0000722_32	eggNOG-mapper	1123263.AUKY01000047_gene20	Single-stranded DNA-binding protein	NA
UHGV-0000722_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0000722_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0000722_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0000722_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0000722_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0000722_35	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0000722_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0000722_36	PHROG	phrog_216	integrase	integration and excision
UHGV-0000722_36	UniRef90	UniRef90_A0A890GUG4	Tyrosine-type recombinase/integrase	NA
UHGV-0000722_36	eggNOG-mapper	1123263.AUKY01000113_gene2072	Integrase	NA
UHGV-0000722_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0000722_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0000722_36	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0000722_37	PHROG	phrog_918	NA	unknown function
UHGV-0000722_37	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0000722_37	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0000722_37	Pfam	PF19791	NA	DUF6275
UHGV-0000722_37	Structural annotation	PF19791	NA	NA
UHGV-0000722_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0000722_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0000722_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0000722_39	UniRef90	UniRef90_A0A380NKA2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0000722_39	eggNOG-mapper	1000569.HMPREF1040_0802	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0000722_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0000722_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0000722_39	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0000722_40	PHROG	phrog_9804	NA	unknown function
UHGV-0000722_40	UniRef90	UniRef90_A0A0D1C1H4	Inhibitor_G39P domain-containing protein	NA
UHGV-0000722_40	eggNOG-mapper	97138.C820_00774	Loader and inhibitor of phage G40P	NA
UHGV-0000722_40	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0000722_40	Structural annotation	PF11417	NA	NA
UHGV-0000722_41	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0000722_41	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0000722_41	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0000722_41	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0000722_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0000722_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0000722_48	UniRef90	UniRef90_M5R560	HTH cro/C1-type domain-containing protein	NA
UHGV-0000722_48	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0000722_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000722_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0000722_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0000722_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0000722_49	UniRef90	UniRef90_A0A1I0B1E8	Helix-turn-helix	NA
UHGV-0000722_49	eggNOG-mapper	521460.Athe_1027	PFAM helix-turn-helix domain protein	NA
UHGV-0000722_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0000722_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000722_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0000722_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0000722_50	UniRef90	UniRef90_A0A416JX49	NA	NA
UHGV-0000722_50	eggNOG-mapper	697281.Mahau_2936	NA	NA
UHGV-0000722_50	Pfam	PF12686	NA	DUF3800
UHGV-0000722_51	KOfam	K14059	int; integrase	NA
UHGV-0000722_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0000722_51	UniRef90	UniRef90_UPI000404C08F	site-specific integrase	NA
UHGV-0000722_51	eggNOG-mapper	1123263.AUKY01000107_gene742	Pfam:Integrase_AP2	NA
UHGV-0000722_51	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0000722_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0000722_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0000722_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA