UHGV-0000741

Genome information

Genome length 43,430 bps

CDS count 68

Completeness 88.10% (medium-quality)

geNomad score 0.9704

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000741
vOTU ID	vOTU-034644
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_19_1543__NODE_49_length_279641_cov_7.382417_1
BioSample	SAMEA4765833
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9704
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.12
Jumbo phage	No

Genome content
Genome length	43,430 bps
GC content	68.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.85%
Average CDS length	579.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000741_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0000741_1	PHROG	phrog_833	endolysin	lysis
UHGV-0000741_1	UniRef90	UniRef90_A0A5K1ICW8	Bifunctional autolysin	NA
UHGV-0000741_1	eggNOG-mapper	1120979.ATVB01000037_gene1492	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0000741_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0000741_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0000741_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0000741_1	Structural annotation	PF01510, MF_04111, NF008758, NF040675, COG5632	NA	NA
UHGV-0000741_2	PHROG	phrog_297	holin	lysis
UHGV-0000741_2	UniRef90	UniRef90_UPI0009F738EC	phage holin	NA
UHGV-0000741_2	eggNOG-mapper	1120998.AUFC01000013_gene2982	Holin, phage phi LC3 family	NA
UHGV-0000741_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0000741_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0000741_2	COG	COG5546	NA	NA
UHGV-0000741_2	Structural annotation	COG5546	NA	NA
UHGV-0000741_3	PHROG	phrog_4105	NA	unknown function
UHGV-0000741_3	eggNOG-mapper	1394176.AWUO01000014_gene648	NA	NA
UHGV-0000741_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0000741_5	PHROG	phrog_16490	NA	unknown function
UHGV-0000741_5	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0000741_6	PHROG	phrog_21718	NA	unknown function
UHGV-0000741_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0000741_8	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0000741_9	PHROG	phrog_6616	tail protein	tail
UHGV-0000741_9	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0000741_9	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0000741_9	COG	COG4926	Phage-related protein	NA
UHGV-0000741_9	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0000741_10	PHROG	phrog_1194	NA	unknown function
UHGV-0000741_10	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0000741_10	Pfam	PF20458	NA	DUF6711
UHGV-0000741_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0000741_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0000741_11	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0000741_11	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0000741_13	UniRef90	UniRef90_UPI0009316611	NA	NA
UHGV-0000741_13	Pfam	PF16478	NA	DUF5055
UHGV-0000741_13	Structural annotation	PF16478	NA	NA
UHGV-0000741_14	PHROG	phrog_158	major tail protein	tail
UHGV-0000741_14	UniRef90	UniRef90_UPI001106E87B	phage tail protein	NA
UHGV-0000741_14	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0000741_14	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0000741_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0000741_15	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0000741_16	UniRef90	UniRef90_UPI001C963648	HK97 gp10 family phage protein	NA
UHGV-0000741_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0000741_18	UniRef90	UniRef90_UPI001C9486FC	phage head-tail connector protein	NA
UHGV-0000741_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0000741_18	Structural annotation	TIGR01560	NA	NA
UHGV-0000741_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0000741_19	UniRef90	UniRef90_UPI001106BB9B	major capsid protein	NA
UHGV-0000741_19	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0000741_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0000741_20	UniRef90	UniRef90_UPI001C9809E0	NA	NA
UHGV-0000741_20	Pfam	PF14265	NA	DUF4355
UHGV-0000741_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0000741_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0000741_21	UniRef90	UniRef90_UPI001C94E255	phage portal protein	NA
UHGV-0000741_21	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0000741_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0000741_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0000741_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0000741_22	UniRef90	UniRef90_UPI001106681D	phage terminase large subunit	NA
UHGV-0000741_22	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0000741_22	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0000741_22	COG	COG5410	NA	NA
UHGV-0000741_22	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0000741_23	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0000741_23	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0000741_23	UniRef90	UniRef90_UPI001BB21D57	recombinase family protein	NA
UHGV-0000741_23	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0000741_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0000741_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0000741_23	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0000741_24	UniRef90	UniRef90_UPI001C98641B	helix-turn-helix domain-containing protein	NA
UHGV-0000741_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0000741_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0000741_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0000741_30	UniRef90	UniRef90_X8HXR3	IstB-like ATP-binding protein	NA
UHGV-0000741_30	eggNOG-mapper	1111121.HMPREF1247_0043	IstB-like ATP binding protein	NA
UHGV-0000741_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0000741_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0000741_31	PHROG	phrog_1163	NA	unknown function
UHGV-0000741_31	UniRef90	UniRef90_A0A7C9NN09	DNA replication protein	NA
UHGV-0000741_31	eggNOG-mapper	139871.A9D9L3_9VIRU	calcium ion binding	NA
UHGV-0000741_31	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0000741_31	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0000741_34	UniRef90	UniRef90_A0A412HTW9	NA	NA
UHGV-0000741_34	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0000741_38	UniRef90	UniRef90_A4E7A1	DNA-binding helix-turn-helix protein	NA
UHGV-0000741_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000741_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0000741_38	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-0000741_39	PHROG	phrog_21525	NA	unknown function
UHGV-0000741_41	PHROG	phrog_21525	NA	unknown function
UHGV-0000741_42	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0000741_42	UniRef90	UniRef90_UPI001BB2BAFF	NA	NA
UHGV-0000741_42	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0000741_42	Pfam	PF14359	NA	DUF4406
UHGV-0000741_43	Structural annotation	PF01649, MF_00500, TIGR00029, COG0268	NA	NA
UHGV-0000741_44	PHROG	phrog_21525	NA	unknown function
UHGV-0000741_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0000741_48	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0000741_48	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0000741_48	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-0000741_48	eggNOG-mapper	1120959.ATXF01000004_gene2616	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0000741_48	Pfam	PF00692	dUTPase	dUTPase
UHGV-0000741_48	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0000741_48	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0000741_48	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0000741_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0000741_50	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0000741_50	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-0000741_50	eggNOG-mapper	1134413.ANNK01000054_gene2223	NA	NA
UHGV-0000741_50	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0000741_51	Structural annotation	PF06530	NA	NA
UHGV-0000741_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0000741_56	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0000741_56	UniRef90	UniRef90_A0A412AQ32	Cytosine-specific methyltransferase	NA
UHGV-0000741_56	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-0000741_56	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0000741_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0000741_56	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0000741_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0000741_56	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0000741_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0000741_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000741_58	UniRef90	UniRef90_UPI000E3BD68B	single-stranded DNA-binding protein	NA
UHGV-0000741_58	eggNOG-mapper	521095.Apar_0020	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0000741_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0000741_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0000741_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0000741_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0000741_58	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0000741_59	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0000741_59	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-0000741_59	eggNOG-mapper	1504822.CCNO01000013_gene307	NA	NA
UHGV-0000741_59	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0000741_60	PHROG	phrog_34396	NA	unknown function
UHGV-0000741_60	UniRef90	UniRef90_UPI0009355547	NA	NA
UHGV-0000741_60	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-0000741_60	Pfam	PF07083	NA	DUF1351
UHGV-0000741_60	Structural annotation	PF07083	NA	NA
UHGV-0000741_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0000741_61	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0000741_61	UniRef90	UniRef90_A0A173XJ55	Holliday junction resolvase	NA
UHGV-0000741_61	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-0000741_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0000741_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0000741_61	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0000741_68	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0000741_68	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0000741_68	UniRef90	UniRef90_U2TPG4	BRO family, N-terminal domain protein	NA
UHGV-0000741_68	eggNOG-mapper	1125712.HMPREF1316_2390	BRO family, N-terminal domain	NA
UHGV-0000741_68	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0000741_68	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0000741_68	COG	COG3617	Prophage antirepressor	NA
UHGV-0000741_68	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA