UHGV-0000887

Genome information

vOTU vOTU-042015

Genome length 30,542 bps

CDS count 50

Completeness 84.06% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000887
vOTU ID	vOTU-042015
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_22_2670__NODE_102_length_157604_cov_16.420925_1
BioSample	SAMEA4766405
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.07
Jumbo phage	No

Genome content
Genome length	30,542 bps
GC content	39.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.28%
Average CDS length	548.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000887_1	eggNOG-mapper	537013.CLOSTMETH_00283	NA	NA
UHGV-0000887_2	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0000887_2	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0000887_2	UniRef90	UniRef90_A0A1M5DBU9	mRNA interferase RelE/StbE	NA
UHGV-0000887_2	eggNOG-mapper	1235793.C809_03093	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0000887_2	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0000887_2	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0000887_2	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0000887_3	PHROG	phrog_3374	NA	unknown function
UHGV-0000887_3	eggNOG-mapper	1410625.JHWK01000002_gene62	NA	NA
UHGV-0000887_4	eggNOG-mapper	742740.HMPREF9474_01371	Peptidoglycan-binding domain 1 protein	NA
UHGV-0000887_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0000887_5	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0000887_5	PHROG	phrog_7872	NA	unknown function
UHGV-0000887_5	UniRef90	UniRef90_UPI00058BF8A2	ion transporter	NA
UHGV-0000887_5	eggNOG-mapper	509191.AEDB02000076_gene1457	Ion transport protein	NA
UHGV-0000887_5	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0000887_5	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0000887_5	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0000887_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0000887_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0000887_6	UniRef90	UniRef90_A0A3D0M2B6	HTH cro/C1-type domain-containing protein	NA
UHGV-0000887_6	eggNOG-mapper	500633.CLOHIR_00339	Peptidase S24-like	NA
UHGV-0000887_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000887_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0000887_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0000887_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0000887_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0000887_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0000887_7	UniRef90	UniRef90_A0A847PN47	Helix-turn-helix transcriptional regulator	NA
UHGV-0000887_7	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0000887_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0000887_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0000887_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0000887_7	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0000887_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0000887_10	UniRef90	UniRef90_A0A7X5R6V4	Helix-turn-helix domain-containing protein	NA
UHGV-0000887_10	eggNOG-mapper	1506583.JQJY01000003_gene3415	Helix-turn-helix domain	NA
UHGV-0000887_10	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0000887_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0000887_10	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0000887_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0000887_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0000887_11	UniRef90	UniRef90_R7LN23	Replicative DNA helicase	NA
UHGV-0000887_11	eggNOG-mapper	1121324.CLIT_4c01960	Participates in initiation and elongation during chromosome replication	NA
UHGV-0000887_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0000887_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0000887_11	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0000887_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0000887_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0000887_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0000887_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000887_12	UniRef90	UniRef90_A0A7X5KSC4	Single-stranded DNA-binding protein	NA
UHGV-0000887_12	eggNOG-mapper	1033740.CAEW01000034_gene1681	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0000887_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0000887_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0000887_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0000887_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0000887_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0000887_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0000887_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0000887_17	UniRef90	UniRef90_A0A414A696	Cytosine-specific methyltransferase	NA
UHGV-0000887_17	eggNOG-mapper	397290.C810_00394	C-5 cytosine-specific DNA methylase	NA
UHGV-0000887_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0000887_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0000887_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0000887_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0000887_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0000887_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0000887_19	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0000887_19	eggNOG-mapper	1499683.CCFF01000005_gene41	NA	NA
UHGV-0000887_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0000887_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0000887_21	UniRef90	UniRef90_A0A7X5KT28	Tyrosine-type recombinase/integrase	NA
UHGV-0000887_21	eggNOG-mapper	1121324.CLIT_8c00830	integrase family	NA
UHGV-0000887_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0000887_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0000887_21	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0000887_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0000887_23	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0000887_23	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0000887_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0000887_24	PHROG	phrog_1066	NA	unknown function
UHGV-0000887_24	UniRef90	UniRef90_A0A7X8WV97	NA	NA
UHGV-0000887_24	eggNOG-mapper	1134413.ANNK01000054_gene2230	NA	NA
UHGV-0000887_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0000887_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0000887_25	UniRef90	UniRef90_A0A1C6K9N5	Phage terminase-like protein, large subunit	NA
UHGV-0000887_25	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0000887_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0000887_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0000887_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0000887_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0000887_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0000887_26	UniRef90	UniRef90_A0A355S0M3	Phage portal protein	NA
UHGV-0000887_26	eggNOG-mapper	1382358.JHVN01000024_gene1705	Phage portal protein	NA
UHGV-0000887_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0000887_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0000887_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0000887_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0000887_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0000887_27	UniRef90	UniRef90_A0A1T4XJC4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0000887_27	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-0000887_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0000887_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0000887_27	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0000887_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0000887_28	UniRef90	UniRef90_A0A353J2M7	Phage major capsid protein	NA
UHGV-0000887_28	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0000887_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0000887_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0000887_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0000887_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0000887_29	PHROG	phrog_5223	neck protein	connector
UHGV-0000887_29	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0000887_29	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0000887_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0000887_29	Structural annotation	TIGR01560	NA	NA
UHGV-0000887_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0000887_30	UniRef90	UniRef90_UPI001B3C8C78	phage head closure protein	NA
UHGV-0000887_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0000887_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0000887_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0000887_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0000887_31	UniRef90	UniRef90_UPI0003B47CD3	HK97 gp10 family phage protein	NA
UHGV-0000887_31	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0000887_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0000887_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0000887_32	PHROG	phrog_78	tail terminator	connector
UHGV-0000887_32	UniRef90	UniRef90_A0A0Z8KW16	Prophage pi2 protein 38	NA
UHGV-0000887_32	eggNOG-mapper	1154860.SAG0136_11465	NA	NA
UHGV-0000887_32	Structural annotation	PF20765	NA	NA
UHGV-0000887_33	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0000887_33	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0000887_33	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0000887_34	PHROG	phrog_29863	NA	unknown function
UHGV-0000887_34	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0000887_35	eggNOG-mapper	1415774.U728_1245	NA	NA
UHGV-0000887_36	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0000887_36	eggNOG-mapper	755731.Clo1100_0555	tail tape measure protein	NA
UHGV-0000887_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0000887_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0000887_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0000887_37	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0000887_38	PHROG	phrog_538	minor tail protein	tail
UHGV-0000887_38	UniRef90	UniRef90_UPI00177E11AC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0000887_38	eggNOG-mapper	1211814.CAPG01000074_gene3443	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0000887_38	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0000887_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0000887_40	PHROG	phrog_16122	virion structural protein	head and packaging
UHGV-0000887_40	eggNOG-mapper	913865.DOT_2883	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0000887_40	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0000887_43	PHROG	phrog_199	holin	lysis
UHGV-0000887_43	UniRef90	UniRef90_A0A373Q192	Holin	NA
UHGV-0000887_43	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0000887_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0000887_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0000887_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0000887_44	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0000887_44	PHROG	phrog_670	endolysin	lysis
UHGV-0000887_44	UniRef90	UniRef90_UPI000F644556	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0000887_44	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0000887_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0000887_44	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0000887_44	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0000887_45	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0000887_46	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0000887_48	Structural annotation	PF01402, NF040976, COG4710	NA	NA