UHGV-0000966

Genome information

vOTU vOTU-020653

Genome length 31,011 bps

CDS count 46

Completeness 86.97% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0000966
vOTU ID	vOTU-020653
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_17_2510__NODE_412_length_96509_cov_5.889114_1
BioSample	SAMEA4766320
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.34
Jumbo phage	No

Genome content
Genome length	31,011 bps
GC content	47.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.40%
Average CDS length	646.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0000966_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0000966_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0000966_1	UniRef90	UniRef90_A0A1H3YV15	Helix-turn-helix	NA
UHGV-0000966_1	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0000966_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0000966_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0000966_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0000966_1	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0000966_2	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-0000966_2	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0000966_3	PHROG	phrog_5079	NA	unknown function
UHGV-0000966_3	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0000966_5	PHROG	phrog_31564	NA	unknown function
UHGV-0000966_6	Structural annotation	PF05339, NF041677, COG3655	NA	NA
UHGV-0000966_10	PHROG	phrog_1733	NA	unknown function
UHGV-0000966_10	eggNOG-mapper	857293.CAAU_0767	NA	NA
UHGV-0000966_10	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0000966_10	Structural annotation	PF03677	NA	NA
UHGV-0000966_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0000966_11	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0000966_11	eggNOG-mapper	447909.A6M981_9VIRU	Siphovirus Gp157	NA
UHGV-0000966_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0000966_11	Structural annotation	PF05565	NA	NA
UHGV-0000966_12	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0000966_12	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0000966_12	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0000966_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0000966_12	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0000966_13	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0000966_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0000966_13	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-0000966_13	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0000966_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0000966_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0000966_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0000966_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0000966_13	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0000966_14	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0000966_14	UniRef90	UniRef90_A0A6N4AKU7	VRR-NUC domain-containing protein	NA
UHGV-0000966_14	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0000966_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0000966_14	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0000966_15	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0000966_15	UniRef90	UniRef90_UPI0006852132	NA	NA
UHGV-0000966_15	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0000966_15	Pfam	PF05037	NA	DUF669
UHGV-0000966_15	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0000966_16	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0000966_16	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0000966_16	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0000966_16	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0000966_16	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0000966_16	Pfam	PF19263	NA	DUF5906
UHGV-0000966_16	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0000966_16	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0000966_16	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0000966_16	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0000966_18	Structural annotation	PF09953	NA	NA
UHGV-0000966_19	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0000966_19	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0000966_19	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0000966_19	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0000966_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0000966_19	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0000966_20	Structural annotation	PF13248	NA	NA
UHGV-0000966_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0000966_21	UniRef90	UniRef90_A0A3M0SXP1	NA	NA
UHGV-0000966_21	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0000966_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0000966_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0000966_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0000966_22	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0000966_22	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0000966_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0000966_22	Structural annotation	PF16677	NA	NA
UHGV-0000966_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0000966_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0000966_23	UniRef90	UniRef90_A0A0X8VAD6	Terminase-like family protein	NA
UHGV-0000966_23	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0000966_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0000966_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0000966_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0000966_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0000966_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0000966_24	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-0000966_24	eggNOG-mapper	1295642.H839_08289	portal protein	NA
UHGV-0000966_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0000966_24	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0000966_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0000966_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0000966_25	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0000966_25	eggNOG-mapper	552525.B5LPR2_9CAUD	Phage minor capsid protein 2	NA
UHGV-0000966_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0000966_25	Structural annotation	PF06152, MF_00018, TIGR00608	NA	NA
UHGV-0000966_28	PHROG	phrog_774	NA	unknown function
UHGV-0000966_28	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0000966_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0000966_30	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0000966_30	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0000966_30	Structural annotation	PF10788	NA	NA
UHGV-0000966_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-0000966_31	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0000966_31	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0000966_31	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0000966_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0000966_32	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0000966_32	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-0000966_33	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0000966_33	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0000966_33	eggNOG-mapper	997296.PB1_16194	Minor capsid protein	NA
UHGV-0000966_33	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0000966_33	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0000966_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0000966_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0000966_34	UniRef90	UniRef90_A0A355V0F3	Minor capsid protein	NA
UHGV-0000966_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0000966_34	Structural annotation	PF11114	NA	NA
UHGV-0000966_35	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0000966_35	Structural annotation	PF12691	NA	NA
UHGV-0000966_36	PHROG	phrog_820	major tail protein	tail
UHGV-0000966_36	UniRef90	UniRef90_A0A355UYH2	Capsid protein	NA
UHGV-0000966_36	eggNOG-mapper	935836.JAEL01000021_gene1488	domain, Protein	NA
UHGV-0000966_36	COG	COG5492	NA	NA
UHGV-0000966_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0000966_37	Structural annotation	PF10666	NA	NA
UHGV-0000966_38	PHROG	phrog_706	NA	unknown function
UHGV-0000966_38	UniRef90	UniRef90_A0A1M4TR02	Bacteriophage Gp15 protein	NA
UHGV-0000966_38	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-0000966_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0000966_38	Structural annotation	PF06854	NA	NA
UHGV-0000966_39	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0000966_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0000966_39	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0000966_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0000966_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0000966_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0000966_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0000966_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0000966_40	UniRef90	UniRef90_A0A843FD70	Phage tail family protein	NA
UHGV-0000966_40	eggNOG-mapper	931626.Awo_c30940	Phage tail protein	NA
UHGV-0000966_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0000966_40	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0000966_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0000966_41	UniRef90	UniRef90_UPI0006C06970	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0000966_41	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0000966_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0000966_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0000966_42	PHROG	phrog_1220	head protein	head and packaging
UHGV-0000966_42	eggNOG-mapper	536232.CLM_2920	NA	NA
UHGV-0000966_44	UniRef90	UniRef90_A0A8A5ZEZ9	ASCH domain-containing protein	NA
UHGV-0000966_44	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0000966_44	Structural annotation	NF040910	NA	NA
UHGV-0000966_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0000966_45	PHROG	phrog_9611	endolysin	lysis
UHGV-0000966_45	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0000966_45	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0000966_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0000966_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0000966_45	Structural annotation	PF01510, PF19087, MF_04111, NF008758, NF041850, COG5632	NA	NA
UHGV-0000966_46	PHROG	phrog_199	holin	lysis
UHGV-0000966_46	UniRef90	UniRef90_A0A396Q4T1	Holin	NA
UHGV-0000966_46	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-0000966_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0000966_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0000966_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0000966_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA