UHGV-0001467

Genome information

vOTU vOTU-019415

Genome length 34,920 bps

CDS count 43

Completeness 89.76% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0001467
vOTU ID	vOTU-019415
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_21_2150__NODE_1641_length_50307_cov_227.150627_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.65
Jumbo phage	No

Genome content
Genome length	34,920 bps
GC content	53.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	97.73%
Average CDS length	797.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0001467_1	PHROG	phrog_27197	NA	unknown function
UHGV-0001467_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0001467_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0001467_1	Structural annotation	NF007410	NA	NA
UHGV-0001467_3	PHROG	phrog_14970	NA	unknown function
UHGV-0001467_3	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0001467_3	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-0001467_3	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0001467_3	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0001467_3	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0001467_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0001467_4	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0001467_4	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0001467_4	Structural annotation	PF05772	NA	NA
UHGV-0001467_5	PHROG	phrog_7566	NA	unknown function
UHGV-0001467_5	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0001467_6	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0001467_6	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0001467_6	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0001467_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0001467_6	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0001467_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0001467_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0001467_7	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0001467_7	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0001467_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0001467_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0001467_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0001467_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0001467_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0001467_8	PHROG	phrog_16304	NA	unknown function
UHGV-0001467_8	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0001467_8	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0001467_8	Pfam	PF19808	NA	DUF6291
UHGV-0001467_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0001467_8	Structural annotation	PF19808	NA	NA
UHGV-0001467_9	PHROG	phrog_9804	NA	unknown function
UHGV-0001467_9	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0001467_9	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0001467_9	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0001467_9	Structural annotation	PF11417	NA	NA
UHGV-0001467_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0001467_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0001467_10	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0001467_10	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0001467_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0001467_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0001467_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0001467_10	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0001467_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0001467_11	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0001467_11	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0001467_11	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-0001467_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0001467_11	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0001467_13	Structural annotation	TIGR04381	NA	NA
UHGV-0001467_15	Structural annotation	PF18895	NA	NA
UHGV-0001467_18	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0001467_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0001467_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0001467_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0001467_20	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0001467_21	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0001467_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0001467_22	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0001467_22	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0001467_22	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0001467_22	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0001467_22	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0001467_23	UniRef90	UniRef90_A0A8D9UHF6	NA	NA
UHGV-0001467_23	eggNOG-mapper	1054213.HMPREF9946_03131	NA	NA
UHGV-0001467_23	Pfam	PF18932	NA	DUF5681
UHGV-0001467_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0001467_24	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0001467_24	UniRef90	UniRef90_A0A8D9UH35	Large subunit terminase	NA
UHGV-0001467_24	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0001467_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0001467_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0001467_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0001467_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-0001467_26	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0001467_26	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0001467_26	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0001467_27	UniRef90	UniRef90_A0A8D9UHD6	Ogr/Delta-like zinc finger	NA
UHGV-0001467_27	Structural annotation	PF20020	NA	NA
UHGV-0001467_28	UniRef90	UniRef90_A0A8D9UHB9	Non-structural protein 5	NA
UHGV-0001467_29	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0001467_29	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0001467_29	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0001467_29	Pfam	PF13252	NA	DUF4043
UHGV-0001467_29	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0001467_29	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0001467_32	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0001467_32	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0001467_32	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0001467_33	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0001467_33	PHROG	phrog_819	tail protein	tail
UHGV-0001467_33	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-0001467_33	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0001467_33	COG	COG4675	Phage tail collar domain	NA
UHGV-0001467_36	Structural annotation	PF13801, TIGR04116, COG5420	NA	NA
UHGV-0001467_37	KOfam	K06871	NA	NA
UHGV-0001467_37	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0001467_37	UniRef90	UniRef90_A0A174B214	Anaerobic sulfatase-maturase	NA
UHGV-0001467_37	eggNOG-mapper	457412.RSAG_01114	4Fe-4S single cluster domain	NA
UHGV-0001467_37	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0001467_37	NCBIFam	TIGR04115.1	radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-0001467_37	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-0001467_37	Structural annotation	PF00962, MF_00660, TIGR04115, COG0641	NA	NA
UHGV-0001467_38	PHROG	phrog_1863	NA	unknown function
UHGV-0001467_38	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0001467_40	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0001467_40	PHROG	phrog_435	endolysin	lysis
UHGV-0001467_40	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0001467_40	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0001467_40	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0001467_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0001467_40	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0001467_41	Structural annotation	MF_01304	NA	NA
UHGV-0001467_42	PHROG	phrog_14770	NA	unknown function
UHGV-0001467_42	UniRef90	UniRef90_A0A8D9UHE1	PolyVal ADP-ribosyltransferase	NA
UHGV-0001467_42	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0001467_42	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0001467_42	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0001467_42	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0001467_42	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA