UHGV-0001812

Genome information

Genome length 36,355 bps

CDS count 63

Completeness 99.63% (high-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-0001812
vOTU ID	vOTU-070467
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_J_12_2311__NODE_28_length_246305_cov_6.927169_1
BioSample	SAMEA4766220
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.85
Jumbo phage	No

Genome content
Genome length	36,355 bps
GC content	27.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.81%
Average CDS length	528.67 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0001812_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0001812_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0001812_1	UniRef90	UniRef90_UPI001BAD55EF	recombinase family protein	NA
UHGV-0001812_1	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0001812_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0001812_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0001812_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0001812_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0001812_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0001812_2	PHROG	phrog_2700	NA	unknown function
UHGV-0001812_2	UniRef90	UniRef90_A0A353JBB7	SHOCT domain-containing protein	NA
UHGV-0001812_2	eggNOG-mapper	1114972.AUAW01000005_gene253	Short C-terminal domain	NA
UHGV-0001812_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0001812_2	Pfam	PF14472	NA	DUF4429
UHGV-0001812_2	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0001812_2	Structural annotation	PF08000, COG3402	NA	NA
UHGV-0001812_3	KOfam	K07707	agrA, blpR, fsrA; two-component system, LytTR family, response regulator AgrA	NA
UHGV-0001812_3	UniRef90	UniRef90_A0A353JBB8	HTH LytTR-type domain-containing protein	NA
UHGV-0001812_3	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0001812_3	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0001812_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0001812_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0001812_4	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-0001812_4	eggNOG-mapper	562981.HMPREF0428_01419	Helix-turn-helix XRE-family like proteins	NA
UHGV-0001812_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0001812_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0001812_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0001812_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0001812_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0001812_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0001812_5	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0001812_8	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0001812_8	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0001812_8	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0001812_8	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0001812_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0001812_8	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0001812_10	PHROG	phrog_4973	NA	unknown function
UHGV-0001812_10	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0001812_10	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0001812_10	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0001812_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0001812_11	UniRef90	UniRef90_R5A0M1	Erf family protein	NA
UHGV-0001812_11	eggNOG-mapper	279808.SH1793	ERF superfamily	NA
UHGV-0001812_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0001812_12	PHROG	phrog_6244	NA	unknown function
UHGV-0001812_12	eggNOG-mapper	1122146.AUHP01000010_gene1069	YqaJ viral recombinase family	NA
UHGV-0001812_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0001812_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0001812_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0001812_14	UniRef90	UniRef90_R5MG88	Single-stranded DNA-binding protein	NA
UHGV-0001812_14	eggNOG-mapper	1408417.JHYB01000002_gene533	single-stranded DNA binding	NA
UHGV-0001812_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0001812_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0001812_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0001812_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0001812_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0001812_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0001812_15	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-0001812_15	eggNOG-mapper	720554.Clocl_4133	Single-stranded DNA-binding protein	NA
UHGV-0001812_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0001812_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0001812_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0001812_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0001812_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0001812_16	eggNOG-mapper	718252.FP2_01040	NA	NA
UHGV-0001812_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0001812_18	Structural annotation	PF01485	NA	NA
UHGV-0001812_23	Structural annotation	PF09947	NA	NA
UHGV-0001812_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0001812_25	UniRef90	UniRef90_A0A329VJW5	HNH endonuclease	NA
UHGV-0001812_25	eggNOG-mapper	1196322.A370_02095	NUMOD4 motif	NA
UHGV-0001812_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0001812_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0001812_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0001812_25	Structural annotation	PF07463	NA	NA
UHGV-0001812_28	KOfam	K07074	NA	NA
UHGV-0001812_28	PHROG	phrog_388	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0001812_28	UniRef90	UniRef90_A0A8D9UHX4	RNA repair pathway DNA polymerase beta family	NA
UHGV-0001812_28	eggNOG-mapper	498761.HM1_0723	Predicted nucleotidyltransferase	NA
UHGV-0001812_28	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-0001812_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0001812_30	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0001812_30	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0001812_30	Pfam	PF14359	NA	DUF4406
UHGV-0001812_30	Structural annotation	PF14359	NA	NA
UHGV-0001812_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0001812_32	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0001812_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0001812_35	PHROG	phrog_10250	NA	unknown function
UHGV-0001812_35	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0001812_35	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0001812_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0001812_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0001812_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0001812_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0001812_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0001812_36	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0001812_36	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0001812_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0001812_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0001812_37	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0001812_37	eggNOG-mapper	999413.HMPREF1094_00219	Phage minor capsid protein 2	NA
UHGV-0001812_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0001812_37	COG	COG2369	NA	NA
UHGV-0001812_37	Structural annotation	PF06152	NA	NA
UHGV-0001812_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0001812_39	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0001812_39	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0001812_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0001812_39	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0001812_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0001812_40	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0001812_40	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0001812_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0001812_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0001812_42	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0001812_43	PHROG	phrog_3366	NA	unknown function
UHGV-0001812_43	Pfam	PF20536	NA	DUF6751
UHGV-0001812_43	Structural annotation	PF20536	NA	NA
UHGV-0001812_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0001812_44	UniRef90	UniRef90_F2JQ09	Minor capsid	NA
UHGV-0001812_44	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0001812_45	PHROG	phrog_3266	tail completion	connector
UHGV-0001812_45	UniRef90	UniRef90_A0A846K5J6	Chloramphenicol resistance protein	NA
UHGV-0001812_45	eggNOG-mapper	536233.CLO_0890	NA	NA
UHGV-0001812_45	Structural annotation	PF12691	NA	NA
UHGV-0001812_46	PHROG	phrog_3099	NA	unknown function
UHGV-0001812_46	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-0001812_47	Structural annotation	PF10666	NA	NA
UHGV-0001812_48	PHROG	phrog_706	NA	unknown function
UHGV-0001812_48	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0001812_48	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0001812_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0001812_48	Structural annotation	PF06854	NA	NA
UHGV-0001812_49	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0001812_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0001812_49	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0001812_49	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0001812_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0001812_50	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0001812_51	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0001812_51	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0001812_53	Structural annotation	NF012201	NA	NA
UHGV-0001812_55	Structural annotation	PF10651	NA	NA
UHGV-0001812_56	Structural annotation	PF03382	NA	NA
UHGV-0001812_58	PHROG	phrog_199	holin	lysis
UHGV-0001812_58	UniRef90	UniRef90_A0A1H6XM70	Toxin secretion/phage lysis holin	NA
UHGV-0001812_58	eggNOG-mapper	1229783.C273_09544	Bacteriophage holin family	NA
UHGV-0001812_58	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0001812_58	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0001812_58	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0001812_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0001812_59	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0001812_59	PHROG	phrog_3088	amidase	lysis
UHGV-0001812_59	UniRef90	UniRef90_A0A412AXM4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0001812_59	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0001812_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0001812_59	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0001812_59	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0001812_63	UniRef90	UniRef90_UPI00195D44DF	glucosaminidase domain-containing protein	NA
UHGV-0001812_63	eggNOG-mapper	1284352.AOIG01000022_gene3821	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0001812_63	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0001812_63	Structural annotation	PF01832, NF007681, COG1705	NA	NA