UHGV-0002202

Genome information

Genome length 33,143 bps

CDS count 46

Completeness 81.25% (medium-quality)

geNomad score 0.9586

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002202
vOTU ID	vOTU-031116
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_4_2182__NODE_248_length_152751_cov_6.705785_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9586
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.8
Jumbo phage	No

Genome content
Genome length	33,143 bps
GC content	63.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.56%
Average CDS length	649.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002202_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0002202_1	PHROG	phrog_3393	endolysin	lysis
UHGV-0002202_1	UniRef90	UniRef90_A0A3N0I9E4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0002202_1	eggNOG-mapper	35760.BCHO_0821	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0002202_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0002202_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0002202_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0002202_2	PHROG	phrog_881	holin	lysis
UHGV-0002202_2	UniRef90	UniRef90_A0A3N0I958	Holin	NA
UHGV-0002202_2	eggNOG-mapper	158787.BSCA_1069	Putative phage holin Dp-1	NA
UHGV-0002202_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0002202_2	Structural annotation	PF16938	NA	NA
UHGV-0002202_3	PHROG	phrog_937	hemolysin	other
UHGV-0002202_4	KOfam	K14059	int; integrase	NA
UHGV-0002202_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0002202_4	UniRef90	UniRef90_A0A7X9UBW7	Site-specific integrase	NA
UHGV-0002202_4	eggNOG-mapper	445975.COLSTE_01092	Belongs to the 'phage' integrase family	NA
UHGV-0002202_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0002202_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002202_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002202_4	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0002202_9	PHROG	phrog_13141	NA	unknown function
UHGV-0002202_9	UniRef90	UniRef90_A0A087E4D0	Phage-related putative tail protein	NA
UHGV-0002202_9	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0002202_9	Structural annotation	PF20747	NA	NA
UHGV-0002202_10	PHROG	phrog_28750	NA	unknown function
UHGV-0002202_11	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0002202_11	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0002202_11	eggNOG-mapper	1139219.I569_00242	Prophage endopeptidase tail	NA
UHGV-0002202_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0002202_11	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0002202_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0002202_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0002202_12	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-0002202_12	eggNOG-mapper	78345.BMERY_0868	NA	NA
UHGV-0002202_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0002202_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0002202_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0002202_13	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0002202_13	eggNOG-mapper	521095.Apar_0589	NA	NA
UHGV-0002202_13	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0002202_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0002202_14	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0002202_14	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0002202_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0002202_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0002202_14	COG	COG1340	NA	NA
UHGV-0002202_17	PHROG	phrog_88	major tail protein	tail
UHGV-0002202_17	UniRef90	UniRef90_UPI00102F83A6	phage tail protein	NA
UHGV-0002202_17	eggNOG-mapper	1280671.AUJH01000012_gene3144	phage major tail protein, phi13 family	NA
UHGV-0002202_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0002202_17	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0002202_18	UniRef90	UniRef90_B7GIN5	Phage related protein	NA
UHGV-0002202_18	eggNOG-mapper	1408437.JNJN01000050_gene1046	NA	NA
UHGV-0002202_18	Structural annotation	PF09646	NA	NA
UHGV-0002202_19	UniRef90	UniRef90_UPI001F196B0F	HK97 gp10 family phage protein	NA
UHGV-0002202_19	eggNOG-mapper	1033743.CAES01000020_gene3135	NA	NA
UHGV-0002202_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0002202_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0002202_21	PHROG	phrog_5223	neck protein	connector
UHGV-0002202_21	eggNOG-mapper	1444306.JFZC01000018_gene2199	NA	NA
UHGV-0002202_21	Structural annotation	TIGR01560	NA	NA
UHGV-0002202_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0002202_23	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-0002202_23	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0002202_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0002202_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0002202_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0002202_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0002202_24	KOfam	K06904	NA	NA
UHGV-0002202_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0002202_24	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0002202_24	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0002202_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0002202_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0002202_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0002202_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0002202_25	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0002202_25	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0002202_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0002202_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0002202_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0002202_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0002202_26	UniRef90	UniRef90_A0A1Q8Q3G7	Terminase	NA
UHGV-0002202_26	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0002202_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0002202_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0002202_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0002202_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0002202_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0002202_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002202_28	UniRef90	UniRef90_UPI000B801769	HNH endonuclease	NA
UHGV-0002202_28	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0002202_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0002202_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0002202_30	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0002202_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0002202_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0002202_38	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0002202_38	UniRef90	UniRef90_UPI001E585BFA	NA	NA
UHGV-0002202_38	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0002202_38	Pfam	PF14359	NA	DUF4406
UHGV-0002202_39	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0002202_39	Structural annotation	PF16090	NA	NA
UHGV-0002202_40	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0002202_40	Structural annotation	PF16090	NA	NA
UHGV-0002202_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0002202_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0002202_41	UniRef90	UniRef90_A0A3N0I8V0	dUTP diphosphatase	NA
UHGV-0002202_41	eggNOG-mapper	871963.Desdi_2570	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0002202_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-0002202_41	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0002202_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0002202_41	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0002202_43	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0002202_43	UniRef90	UniRef90_A0A7K3L0G1	Phg_2220_C domain-containing protein	NA
UHGV-0002202_43	eggNOG-mapper	479437.Elen_2605	NA	NA
UHGV-0002202_43	Pfam	PF19808	NA	DUF6291
UHGV-0002202_43	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0002202_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0002202_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0002202_44	UniRef90	UniRef90_A0A3N0I7M0	Single-stranded DNA-binding protein	NA
UHGV-0002202_44	eggNOG-mapper	649764.HMPREF0762_01175	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0002202_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0002202_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0002202_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0002202_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0002202_44	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0002202_45	PHROG	phrog_10079	NA	unknown function
UHGV-0002202_45	eggNOG-mapper	1415775.U729_3094	NA	NA
UHGV-0002202_46	KOfam	K14059	int; integrase	NA
UHGV-0002202_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0002202_46	UniRef90	UniRef90_A0A8F2INE9	Site-specific integrase	NA
UHGV-0002202_46	eggNOG-mapper	521095.Apar_0567	Belongs to the 'phage' integrase family	NA
UHGV-0002202_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002202_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002202_46	Structural annotation	PF00589, MF_02055, NF040815, COG0582	NA	NA