UHGV-0002679

Genome information

vOTU vOTU-011977

Genome length 35,814 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002679
vOTU ID	vOTU-011977
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_K_18_2626__NODE_217_length_145508_cov_9.026851_1
BioSample	SAMEA4766372
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.79
Jumbo phage	No

Genome content
Genome length	35,814 bps
GC content	38.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.62%
Average CDS length	709.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002679_1	Structural annotation	NF040910	NA	NA
UHGV-0002679_3	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0002679_3	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0002679_3	UniRef90	UniRef90_A0A174K662	Retron-type reverse transcriptase	NA
UHGV-0002679_3	eggNOG-mapper	478749.BRYFOR_08556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0002679_3	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0002679_3	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0002679_3	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0002679_3	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0002679_4	PHROG	phrog_17147	NA	unknown function
UHGV-0002679_4	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0002679_5	PHROG	phrog_1129	holin	lysis
UHGV-0002679_5	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0002679_5	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0002679_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0002679_6	PHROG	phrog_4105	NA	unknown function
UHGV-0002679_6	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0002679_7	COG	COG3942	Surface antigen	NA
UHGV-0002679_7	Structural annotation	PF05382, NF033742, COG3942	NA	NA
UHGV-0002679_8	PHROG	phrog_1401	NA	unknown function
UHGV-0002679_9	PHROG	phrog_18190	NA	unknown function
UHGV-0002679_9	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0002679_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0002679_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0002679_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0002679_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0002679_11	UniRef90	UniRef90_W0U887	Putative minor tail protein	NA
UHGV-0002679_11	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-0002679_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0002679_12	PHROG	phrog_706	NA	unknown function
UHGV-0002679_12	UniRef90	UniRef90_UPI0015941ACD	Gp15 family bacteriophage protein	NA
UHGV-0002679_12	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0002679_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0002679_12	Structural annotation	PF06854	NA	NA
UHGV-0002679_13	PHROG	phrog_11299	NA	unknown function
UHGV-0002679_13	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0002679_13	Structural annotation	PF10666	NA	NA
UHGV-0002679_14	PHROG	phrog_3099	NA	unknown function
UHGV-0002679_14	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0002679_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0002679_15	PHROG	phrog_918	NA	unknown function
UHGV-0002679_15	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0002679_15	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0002679_15	Pfam	PF19791	NA	DUF6275
UHGV-0002679_15	Structural annotation	PF19791	NA	NA
UHGV-0002679_16	PHROG	phrog_3266	tail completion	connector
UHGV-0002679_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0002679_16	Structural annotation	PF20765	NA	NA
UHGV-0002679_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0002679_17	UniRef90	UniRef90_UPI000691B8FF	minor capsid protein	NA
UHGV-0002679_17	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0002679_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0002679_17	Structural annotation	PF11114	NA	NA
UHGV-0002679_18	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0002679_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0002679_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0002679_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0002679_19	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0002679_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0002679_21	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0002679_21	eggNOG-mapper	1125725.HMPREF1325_1332	NA	NA
UHGV-0002679_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0002679_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0002679_22	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-0002679_22	eggNOG-mapper	742723.HMPREF9477_00907	Phage minor structural protein GP20	NA
UHGV-0002679_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0002679_22	Structural annotation	PF06810	NA	NA
UHGV-0002679_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0002679_23	UniRef90	UniRef90_UPI00138F9ED1	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0002679_23	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0002679_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0002679_23	COG	COG2369	NA	NA
UHGV-0002679_23	Structural annotation	PF06152	NA	NA
UHGV-0002679_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0002679_24	UniRef90	UniRef90_A0A3P1S3R5	Phage capsid protein	NA
UHGV-0002679_24	eggNOG-mapper	742723.HMPREF9477_00910	NA	NA
UHGV-0002679_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0002679_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002679_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0002679_25	UniRef90	UniRef90_A0A3P1S603	PBSX family phage terminase large subunit	NA
UHGV-0002679_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0002679_25	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0002679_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0002679_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0002679_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0002679_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002679_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0002679_26	PHROG	phrog_9479	NA	unknown function
UHGV-0002679_26	Structural annotation	PF15529	NA	NA
UHGV-0002679_27	PHROG	phrog_5057	NA	unknown function
UHGV-0002679_29	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0002679_29	UniRef90	UniRef90_UPI0009327623	NA	NA
UHGV-0002679_29	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0002679_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0002679_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0002679_29	Pfam	PF14386	NA	DUF4417
UHGV-0002679_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0002679_29	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0002679_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0002679_31	eggNOG-mapper	679192.HMPREF9013_1311	NA	NA
UHGV-0002679_32	PHROG	phrog_1374	NA	unknown function
UHGV-0002679_32	eggNOG-mapper	1145276.T479_09960	NA	NA
UHGV-0002679_33	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0002679_33	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0002679_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0002679_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0002679_34	UniRef90	UniRef90_UPI00164BE106	single-stranded DNA-binding protein	NA
UHGV-0002679_34	eggNOG-mapper	1158608.I583_02882	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0002679_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0002679_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0002679_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0002679_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0002679_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0002679_35	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0002679_35	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0002679_35	UniRef90	UniRef90_A0A3D5XP59	Lactamase_B domain-containing protein	NA
UHGV-0002679_35	eggNOG-mapper	1401067.HMPREF0872_00405	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0002679_35	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0002679_35	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0002679_35	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0002679_36	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0002679_36	UniRef90	UniRef90_A0A6G8APQ8	Recombinase RecT	NA
UHGV-0002679_36	eggNOG-mapper	1449338.JQLU01000005_gene3745	NA	NA
UHGV-0002679_36	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0002679_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0002679_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002679_37	UniRef90	UniRef90_A0A6N7S5U7	AAA family ATPase	NA
UHGV-0002679_37	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0002679_37	PADLOC	AAA_15	NA	NA
UHGV-0002679_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0002679_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0002679_40	eggNOG-mapper	1123263.AUKY01000072_gene2106	NA	NA