UHGV-0002697

Genome information

Genome length 33,644 bps

CDS count 55

Completeness 86.50% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002697
vOTU ID	vOTU-018461
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_224_length_158995_cov_8.481437_1
BioSample	SAMEA4766013
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.16
Jumbo phage	No

Genome content
Genome length	33,644 bps
GC content	27.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.68%
Average CDS length	551.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002697_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0002697_1	PHROG	phrog_1493	endolysin	lysis
UHGV-0002697_1	UniRef90	UniRef90_R5YUL1	N-acetylmuramoyl-L-alanine amidase cwlL (Cellwall hydrolase) (Autolysin)	NA
UHGV-0002697_1	eggNOG-mapper	1443122.Z958_08055	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0002697_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0002697_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0002697_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0002697_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0002697_2	Structural annotation	PF16938	NA	NA
UHGV-0002697_4	PHROG	phrog_2310	NA	unknown function
UHGV-0002697_4	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0002697_6	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0002697_8	eggNOG-mapper	509191.AEDB02000102_gene3725	RHS repeat-associated core domain	NA
UHGV-0002697_8	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0002697_8	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0002697_8	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0002697_10	PHROG	phrog_13879	NA	unknown function
UHGV-0002697_10	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0002697_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0002697_11	PHROG	phrog_1194	NA	unknown function
UHGV-0002697_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0002697_12	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0002697_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0002697_12	eggNOG-mapper	1232449.BAHV02000010_gene2723	domain protein	NA
UHGV-0002697_12	COG	COG1511	NA	NA
UHGV-0002697_12	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0002697_13	PHROG	phrog_26308	NA	unknown function
UHGV-0002697_13	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0002697_13	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0002697_13	COG	COG3103	NA	NA
UHGV-0002697_13	Structural annotation	PF11355, PF13828, MF_00791, TIGR02588, COG5633	NA	NA
UHGV-0002697_14	Structural annotation	PF12363	NA	NA
UHGV-0002697_15	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-0002697_15	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0002697_16	Structural annotation	PF05657	NA	NA
UHGV-0002697_17	Structural annotation	TIGR01725	NA	NA
UHGV-0002697_18	eggNOG-mapper	445972.ANACOL_01848	NA	NA
UHGV-0002697_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0002697_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0002697_20	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0002697_20	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0002697_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0002697_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0002697_20	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0002697_21	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0002697_21	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0002697_21	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0002697_21	Pfam	PF14265	NA	DUF4355
UHGV-0002697_21	Structural annotation	PF14265	NA	NA
UHGV-0002697_22	AcrCatalog	cluster_73853	NA	NA
UHGV-0002697_24	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0002697_24	eggNOG-mapper	665956.HMPREF1032_03615	cell adhesion	NA
UHGV-0002697_24	COG	COG2369	NA	NA
UHGV-0002697_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0002697_25	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0002697_25	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0002697_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0002697_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0002697_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002697_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0002697_26	UniRef90	UniRef90_R6HF73	Phage terminase large subunit PBSX family	NA
UHGV-0002697_26	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0002697_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0002697_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002697_26	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0002697_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002697_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0002697_27	UniRef90	UniRef90_R6H5U4	Phage terminase large subunit PBSX family	NA
UHGV-0002697_27	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0002697_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0002697_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002697_27	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0002697_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0002697_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0002697_28	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0002697_28	eggNOG-mapper	246194.CHY_1681	terminase, small subunit	NA
UHGV-0002697_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0002697_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0002697_30	PHROG	phrog_1233	NA	unknown function
UHGV-0002697_30	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0002697_30	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0002697_30	Structural annotation	PF13058	NA	NA
UHGV-0002697_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0002697_33	eggNOG-mapper	1121871.AUAT01000030_gene1019	NA	NA
UHGV-0002697_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0002697_33	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0002697_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0002697_34	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0002697_34	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0002697_35	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-0002697_39	Structural annotation	PF09630, MF_00273, NF001981, COG2157	NA	NA
UHGV-0002697_40	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0002697_40	UniRef90	UniRef90_A0A151B7Z2	Endodeoxyribonuclease RusA	NA
UHGV-0002697_40	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0002697_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0002697_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0002697_42	PHROG	phrog_4973	NA	unknown function
UHGV-0002697_42	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0002697_42	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0002697_42	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0002697_42	Structural annotation	PF14090, NF008549, COG4738	NA	NA
UHGV-0002697_44	Structural annotation	PF11417	NA	NA
UHGV-0002697_45	PHROG	phrog_11769	NA	unknown function
UHGV-0002697_45	UniRef90	UniRef90_UPI000C082241	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0002697_45	eggNOG-mapper	1499683.CCFF01000013_gene501	phage replisome	NA
UHGV-0002697_45	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0002697_45	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0002697_45	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0002697_46	PHROG	phrog_7566	NA	unknown function
UHGV-0002697_46	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0002697_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0002697_48	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0002697_48	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0002697_48	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0002697_49	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002697_49	UniRef90	UniRef90_R7BGM2	Gp148	NA
UHGV-0002697_49	eggNOG-mapper	552525.B5LPN5_9CAUD	HNH endonuclease	NA
UHGV-0002697_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0002697_49	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0002697_50	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0002697_50	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0002697_50	Pfam	PF13479	AAA domain	AAA_24
UHGV-0002697_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0002697_50	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0002697_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0002697_51	UniRef90	UniRef90_A0A4V1QXJ0	Siphovirus Gp157 family protein	NA
UHGV-0002697_51	eggNOG-mapper	500633.CLOHIR_01418	Siphovirus Gp157	NA
UHGV-0002697_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0002697_51	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0002697_55	UniRef90	UniRef90_A0A8B4HXZ0	Prophage pi2 protein 05	NA
UHGV-0002697_55	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0002697_55	Pfam	PF05339	NA	DUF739
UHGV-0002697_55	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0002697_55	Structural annotation	PF05339, NF002773, COG1476	NA	NA