UHGV-0002702

Genome information

Genome length 35,754 bps

CDS count 66

Completeness 96.83% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002702
vOTU ID	vOTU-063037
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_5_1733__NODE_115_length_202312_cov_247.946740_1
BioSample	SAMEA4766013
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.36
Jumbo phage	No

Genome content
Genome length	35,754 bps
GC content	28.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.92%
Average CDS length	507.27 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002702_1	UniRef90	UniRef90_A0A843HY42	CHAP domain-containing protein	NA
UHGV-0002702_1	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-0002702_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0002702_1	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0002702_1	Structural annotation	PF02427, COG3942, COG2139	NA	NA
UHGV-0002702_4	PHROG	phrog_13632	NA	unknown function
UHGV-0002702_6	PHROG	phrog_372	tail protein	tail
UHGV-0002702_6	UniRef90	UniRef90_A0A2U8UIA2	Minor tail protein	NA
UHGV-0002702_6	eggNOG-mapper	1214217.ALNF01000014_gene1363	NA	NA
UHGV-0002702_6	Pfam	PF05895	NA	DUF859
UHGV-0002702_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-0002702_8	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0002702_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0002702_9	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0002702_9	eggNOG-mapper	420890.LCGL_1120	Phage tail tape measure protein TP901	NA
UHGV-0002702_9	COG	COG1511	NA	NA
UHGV-0002702_10	PHROG	phrog_706	NA	unknown function
UHGV-0002702_10	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0002702_10	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0002702_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0002702_10	Structural annotation	PF06854	NA	NA
UHGV-0002702_11	Structural annotation	PF10666	NA	NA
UHGV-0002702_12	PHROG	phrog_3099	NA	unknown function
UHGV-0002702_12	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-0002702_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0002702_13	PHROG	phrog_3266	tail completion	connector
UHGV-0002702_13	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-0002702_13	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-0002702_13	Structural annotation	PF12691	NA	NA
UHGV-0002702_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0002702_14	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0002702_14	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0002702_14	Structural annotation	PF11114	NA	NA
UHGV-0002702_15	PHROG	phrog_3366	NA	unknown function
UHGV-0002702_15	Structural annotation	PF20536	NA	NA
UHGV-0002702_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0002702_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0002702_16	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0002702_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0002702_18	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0002702_18	eggNOG-mapper	1232436.CAPF01000009_gene1770	NA	NA
UHGV-0002702_18	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0002702_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0002702_19	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-0002702_19	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0002702_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0002702_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0002702_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0002702_20	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0002702_20	eggNOG-mapper	1378168.N510_02341	cell adhesion	NA
UHGV-0002702_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0002702_20	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0002702_20	COG	COG2369	NA	NA
UHGV-0002702_20	Structural annotation	PF06152	NA	NA
UHGV-0002702_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0002702_21	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0002702_21	eggNOG-mapper	1032362.F6K8Q7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0002702_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0002702_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0002702_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002702_22	PHROG	phrog_10250	NA	unknown function
UHGV-0002702_22	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0002702_22	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0002702_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0002702_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0002702_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0002702_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002702_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0002702_23	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-0002702_23	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0002702_23	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0002702_24	Structural annotation	PF10922	NA	NA
UHGV-0002702_26	Structural annotation	PF15456	NA	NA
UHGV-0002702_28	Structural annotation	PF10654	NA	NA
UHGV-0002702_33	UniRef90	UniRef90_A0A1Q6L7Q8	NOB1_Zn_bind domain-containing protein	NA
UHGV-0002702_33	Structural annotation	PF09947	NA	NA
UHGV-0002702_34	PHROG	phrog_5068	NA	unknown function
UHGV-0002702_35	PHROG	phrog_625	NA	unknown function
UHGV-0002702_35	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0002702_35	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0002702_35	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-0002702_43	PHROG	phrog_1934	NA	unknown function
UHGV-0002702_43	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0002702_43	eggNOG-mapper	442493.A8E2Q7_BPPHE	NA	NA
UHGV-0002702_43	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0002702_43	Structural annotation	PF11672	NA	NA
UHGV-0002702_45	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0002702_45	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0002702_45	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0002702_45	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0002702_45	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0002702_45	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0002702_45	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0002702_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0002702_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0002702_48	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-0002702_48	eggNOG-mapper	1121936.AUHI01000014_gene22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0002702_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0002702_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0002702_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0002702_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0002702_48	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0002702_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0002702_50	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0002702_50	Structural annotation	PF05772	NA	NA
UHGV-0002702_51	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002702_51	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0002702_51	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0002702_51	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0002702_52	PHROG	phrog_6244	NA	unknown function
UHGV-0002702_52	UniRef90	UniRef90_A0A7W3SYY9	Putative phage-related endonuclease	NA
UHGV-0002702_52	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0002702_52	Structural annotation	PF05565	NA	NA
UHGV-0002702_56	PHROG	phrog_35156	NA	unknown function
UHGV-0002702_56	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0002702_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0002702_56	Structural annotation	PF19808	NA	NA
UHGV-0002702_58	Structural annotation	PF11372	NA	NA
UHGV-0002702_61	UniRef90	UniRef90_A0A662RGW0	Transcriptional regulator	NA
UHGV-0002702_61	eggNOG-mapper	420247.Msm_1150	Transcriptional regulator	NA
UHGV-0002702_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002702_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0002702_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0002702_62	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0002702_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0002702_62	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-0002702_62	eggNOG-mapper	1280666.ATVS01000056_gene2760	helix-turn-helix	NA
UHGV-0002702_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002702_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0002702_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0002702_63	UniRef90	UniRef90_R5AAT8	Peptidase_M78 domain-containing protein	NA
UHGV-0002702_63	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0002702_63	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0002702_66	KOfam	K14059	int; integrase	NA
UHGV-0002702_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0002702_66	UniRef90	UniRef90_A0A843GV89	Site-specific integrase	NA
UHGV-0002702_66	eggNOG-mapper	1118063.I7I4C5_9CAUD	Phage integrase family	NA
UHGV-0002702_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0002702_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002702_66	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA