UHGV-0002708

Genome information

vOTU vOTU-020603

Genome length 30,710 bps

CDS count 54

Completeness 85.97% (medium-quality)

geNomad score 0.9356

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002708
vOTU ID	vOTU-020603
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_19_1543__NODE_32_length_322133_cov_6.894509_1
BioSample	SAMEA4765833
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9356
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.3
Jumbo phage	No

Genome content
Genome length	30,710 bps
GC content	67.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.40%
Average CDS length	499.44 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002708_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0002708_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0002708_1	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-0002708_1	eggNOG-mapper	1504822.CCNO01000015_gene589	SOS response	NA
UHGV-0002708_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002708_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0002708_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0002708_1	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0002708_4	UniRef90	UniRef90_A0A5C5BRF6	DNA-binding protein	NA
UHGV-0002708_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0002708_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0002708_8	UniRef90	UniRef90_UPI000E3CCC4C	single-stranded DNA-binding protein	NA
UHGV-0002708_8	eggNOG-mapper	1203602.HMPREF1527_01126	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0002708_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0002708_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0002708_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0002708_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0002708_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0002708_9	UniRef90	UniRef90_UPI000E3C1052	NA	NA
UHGV-0002708_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0002708_9	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0002708_11	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002708_11	UniRef90	UniRef90_UPI000E3C5F64	HNH endonuclease	NA
UHGV-0002708_11	eggNOG-mapper	663278.Ethha_2443	HNH endonuclease	NA
UHGV-0002708_11	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0002708_11	Structural annotation	PF13392	NA	NA
UHGV-0002708_13	PHROG	phrog_21525	NA	unknown function
UHGV-0002708_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0002708_14	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0002708_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0002708_16	PHROG	phrog_21525	NA	unknown function
UHGV-0002708_18	UniRef90	UniRef90_UPI000E3BC5A6	NA	NA
UHGV-0002708_19	KOfam	K14059	int; integrase	NA
UHGV-0002708_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0002708_19	UniRef90	UniRef90_UPI000E3C8C88	site-specific integrase	NA
UHGV-0002708_19	eggNOG-mapper	208444.JNYY01000001_gene4846	Phage integrase family	NA
UHGV-0002708_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002708_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002708_19	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0002708_20	UniRef90	UniRef90_A0A415JHP5	Sigma70_r4_2 domain-containing protein	NA
UHGV-0002708_20	eggNOG-mapper	1125712.HMPREF1316_1526	NA	NA
UHGV-0002708_20	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0002708_23	eggNOG-mapper	1203602.HMPREF1527_01098	NA	NA
UHGV-0002708_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002708_25	UniRef90	UniRef90_A0A414JEM2	HNH endonuclease	NA
UHGV-0002708_25	eggNOG-mapper	1121866.AUGK01000014_gene2060	HNH nucleases	NA
UHGV-0002708_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0002708_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0002708_25	Structural annotation	PF01844	NA	NA
UHGV-0002708_26	Structural annotation	PF04218, COG1710	NA	NA
UHGV-0002708_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0002708_27	UniRef90	UniRef90_A0A3G9K0Y6	Phage terminase	NA
UHGV-0002708_27	eggNOG-mapper	1203602.HMPREF1527_01095	Terminase	NA
UHGV-0002708_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0002708_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0002708_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0002708_28	UniRef90	UniRef90_A0A414JEQ3	Phage portal protein (Fragment)	NA
UHGV-0002708_28	eggNOG-mapper	742742.HMPREF9452_01310	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0002708_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0002708_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0002708_29	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0002708_29	UniRef90	UniRef90_R7BP20	CdiA_C domain-containing protein	NA
UHGV-0002708_29	eggNOG-mapper	521003.COLINT_02341	NA	NA
UHGV-0002708_30	PHROG	phrog_9857	head scaffolding protein	head and packaging
UHGV-0002708_30	UniRef90	UniRef90_UPI00096AB01B	NA	NA
UHGV-0002708_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0002708_31	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0002708_31	eggNOG-mapper	1125712.HMPREF1316_1517	NA	NA
UHGV-0002708_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0002708_34	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0002708_34	UniRef90	UniRef90_UPI00164FAC50	Gp19/Gp15/Gp42 family protein	NA
UHGV-0002708_34	eggNOG-mapper	521095.Apar_0581	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0002708_34	Pfam	PF09355	NA	Phage_Gp19
UHGV-0002708_35	PHROG	phrog_501	head closure Hc1	connector
UHGV-0002708_35	UniRef90	UniRef90_A0A5C7ERG1	Head-tail adaptor protein	NA
UHGV-0002708_35	eggNOG-mapper	521003.COLINT_02346	NA	NA
UHGV-0002708_35	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0002708_36	PHROG	phrog_387	neck protein	connector
UHGV-0002708_37	Structural annotation	PF06141	NA	NA
UHGV-0002708_38	PHROG	phrog_117	major tail protein	tail
UHGV-0002708_38	UniRef90	UniRef90_A0A3G9K0Z3	Major tail protein	NA
UHGV-0002708_38	eggNOG-mapper	521003.COLINT_02349	domain, Protein	NA
UHGV-0002708_38	COG	COG5492	NA	NA
UHGV-0002708_38	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0002708_40	PHROG	phrog_17020	NA	unknown function
UHGV-0002708_40	UniRef90	UniRef90_A0A3G9K7T2	TMP_3 domain-containing protein	NA
UHGV-0002708_40	eggNOG-mapper	566552.BIFCAT_00862	Transglycosylase SLT domain	NA
UHGV-0002708_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0002708_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0002708_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0002708_41	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0002708_41	eggNOG-mapper	78345.BMERY_0869	NA	NA
UHGV-0002708_41	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0002708_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0002708_42	UniRef90	UniRef90_UPI001C2424C5	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0002708_42	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0002708_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0002708_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0002708_43	Structural annotation	PF20622	NA	NA
UHGV-0002708_44	PHROG	phrog_819	tail protein	tail
UHGV-0002708_44	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0002708_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0002708_44	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0002708_45	PHROG	phrog_819	tail protein	tail
UHGV-0002708_45	UniRef90	UniRef90_UPI0011063329	collagen-like protein	NA
UHGV-0002708_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0002708_46	PHROG	phrog_9994	NA	unknown function
UHGV-0002708_46	UniRef90	UniRef90_UPI00189FD7EF	RICIN domain-containing protein	NA
UHGV-0002708_46	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-0002708_46	Structural annotation	PF21454, PF20747	NA	NA
UHGV-0002708_49	KOfam	K14059	int; integrase	NA
UHGV-0002708_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0002708_49	UniRef90	UniRef90_A0A3G9JWP5	Integrase	NA
UHGV-0002708_49	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0002708_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0002708_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002708_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002708_49	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0002708_50	eggNOG-mapper	1242864.D187_002289	Belongs to the glycosyl hydrolase 18 family	NA
UHGV-0002708_50	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0002708_50	COG	COG3325	Chitinase, GH18 family	NA
UHGV-0002708_51	PHROG	phrog_30034	NA	unknown function
UHGV-0002708_51	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0002708_51	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0002708_52	PHROG	phrog_4105	NA	unknown function
UHGV-0002708_52	eggNOG-mapper	218140.BPSY_0948	NA	NA
UHGV-0002708_53	PHROG	phrog_443	holin	lysis
UHGV-0002708_53	UniRef90	UniRef90_UPI00096A4162	holin	NA
UHGV-0002708_53	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-0002708_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0002708_53	Structural annotation	PF16945	NA	NA