UHGV-0002753

Genome information

vOTU vOTU-061928

Genome length 41,553 bps

CDS count 65

Completeness 92.66% (high-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002753
vOTU ID	vOTU-061928
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_22_2670__NODE_88_length_165178_cov_26.608670_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.64
Jumbo phage	No

Genome content
Genome length	41,553 bps
GC content	36.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.65%
Average CDS length	569.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002753_1	PHROG	phrog_33130	NA	unknown function
UHGV-0002753_1	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0002753_1	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0002753_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002753_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0002753_2	UniRef90	UniRef90_A0A1C7I418	Terminase	NA
UHGV-0002753_2	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0002753_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0002753_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0002753_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0002753_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0002753_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002753_2	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0002753_3	PHROG	phrog_1233	NA	unknown function
UHGV-0002753_3	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0002753_3	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0002753_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0002753_4	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0002753_4	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0002753_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0002753_6	UniRef90	UniRef90_UPI001D1104BB	glycoside hydrolase family 55 protein	NA
UHGV-0002753_6	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0002753_7	eggNOG-mapper	397291.C804_01000	NA	NA
UHGV-0002753_11	PHROG	phrog_199	holin	lysis
UHGV-0002753_11	UniRef90	UniRef90_A0A2N5PMH4	Holin	NA
UHGV-0002753_11	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0002753_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0002753_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0002753_11	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0002753_11	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0002753_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0002753_12	eggNOG-mapper	397290.C810_05200	NA	NA
UHGV-0002753_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0002753_12	Structural annotation	PF11114	NA	NA
UHGV-0002753_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0002753_13	UniRef90	UniRef90_UPI001D067B9F	phage minor capsid protein	NA
UHGV-0002753_13	eggNOG-mapper	1235790.C805_00050	Phage minor capsid protein 2	NA
UHGV-0002753_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0002753_13	COG	COG2369	NA	NA
UHGV-0002753_13	Structural annotation	PF06152	NA	NA
UHGV-0002753_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0002753_15	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0002753_15	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0002753_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0002753_15	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0002753_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0002753_16	UniRef90	UniRef90_A0A417A964	Phage coat protein	NA
UHGV-0002753_16	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0002753_16	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0002753_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0002753_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0002753_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0002753_17	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0002753_18	PHROG	phrog_3366	NA	unknown function
UHGV-0002753_18	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0002753_18	Pfam	PF20536	NA	DUF6751
UHGV-0002753_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0002753_19	PHROG	phrog_3266	tail completion	connector
UHGV-0002753_19	Structural annotation	PF12691	NA	NA
UHGV-0002753_20	PHROG	phrog_3099	NA	unknown function
UHGV-0002753_20	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0002753_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0002753_21	PHROG	phrog_11299	NA	unknown function
UHGV-0002753_21	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0002753_21	Structural annotation	PF10666	NA	NA
UHGV-0002753_22	PHROG	phrog_706	NA	unknown function
UHGV-0002753_22	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0002753_22	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0002753_22	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0002753_22	Structural annotation	PF06854	NA	NA
UHGV-0002753_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0002753_23	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0002753_23	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0002753_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0002753_24	PHROG	phrog_1194	NA	unknown function
UHGV-0002753_24	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0002753_24	Pfam	PF20458	NA	DUF6711
UHGV-0002753_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0002753_25	PHROG	phrog_18190	NA	unknown function
UHGV-0002753_25	UniRef90	UniRef90_A0A396NP65	Tail fiber domain-containing protein	NA
UHGV-0002753_25	eggNOG-mapper	1304866.K413DRAFT_3048	NA	NA
UHGV-0002753_25	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0002753_27	UniRef90	UniRef90_UPI00102F6CA0	XkdX family protein	NA
UHGV-0002753_27	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0002753_30	PHROG	phrog_443	holin	lysis
UHGV-0002753_30	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0002753_30	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0002753_30	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0002753_30	Structural annotation	PF16945	NA	NA
UHGV-0002753_31	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0002753_31	PHROG	phrog_3513	endolysin	lysis
UHGV-0002753_31	UniRef90	UniRef90_A0A1Q6ST55	LYZ2 domain-containing protein	NA
UHGV-0002753_31	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-0002753_31	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0002753_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0002753_31	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0002753_31	Structural annotation	PF01471, PF01832, NF038016, COG1705, COG3409	NA	NA
UHGV-0002753_33	UniRef90	UniRef90_UPI0015708BEA	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0002753_33	Pfam	PF10601	LITAF-like zinc ribbon domain	zf-LITAF-like
UHGV-0002753_33	Structural annotation	PF01096, TIGR04165, COG3478	NA	NA
UHGV-0002753_34	PHROG	phrog_19315	NA	unknown function
UHGV-0002753_34	UniRef90	UniRef90_A0A3A6EGE6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0002753_34	eggNOG-mapper	386415.NT01CX_2202	NA	NA
UHGV-0002753_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0002753_34	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0002753_34	COG	COG1592	Rubrerythrin	NA
UHGV-0002753_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0002753_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0002753_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0002753_35	UniRef90	UniRef90_A0A841R4B0	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-0002753_35	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0002753_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002753_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0002753_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0002753_36	UniRef90	UniRef90_A0A1I5EN34	Helix-turn-helix	NA
UHGV-0002753_36	eggNOG-mapper	1034347.CAHJ01000051_gene30	NA	NA
UHGV-0002753_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0002753_36	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0002753_37	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0002753_37	UniRef90	UniRef90_UPI0003E89799	Rha family transcriptional regulator	NA
UHGV-0002753_37	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-0002753_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0002753_37	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0002753_37	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0002753_38	UniRef90	UniRef90_A0A0V8QIX1	Transcriptional regulator	NA
UHGV-0002753_38	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0002753_38	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0002753_39	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0002753_39	UniRef90	UniRef90_A0A6N2TXK2	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0002753_39	eggNOG-mapper	397290.C810_01445	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0002753_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0002753_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0002753_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0002753_39	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0002753_40	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0002753_40	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0002753_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002753_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0002753_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0002753_42	UniRef90	UniRef90_UPI001C00DDF6	phage antirepressor KilAC domain-containing protein	NA
UHGV-0002753_42	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0002753_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0002753_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0002753_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0002753_42	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0002753_43	UniRef90	UniRef90_A0A416ZXQ1	NA	NA
UHGV-0002753_43	Pfam	PF05339	NA	DUF739
UHGV-0002753_43	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0002753_43	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0002753_46	PHROG	phrog_674	NA	unknown function
UHGV-0002753_46	UniRef90	UniRef90_UPI001C1259C1	NA	NA
UHGV-0002753_46	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0002753_46	Pfam	PF07083	NA	DUF1351
UHGV-0002753_46	Structural annotation	PF07083	NA	NA
UHGV-0002753_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0002753_48	UniRef90	UniRef90_UPI001BC855FA	ERF family protein	NA
UHGV-0002753_48	eggNOG-mapper	1462527.CCDM010000010_gene489	ERF superfamily	NA
UHGV-0002753_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0002753_48	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0002753_49	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0002753_49	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0002753_49	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0002753_50	PHROG	phrog_7566	NA	unknown function
UHGV-0002753_50	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0002753_50	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0002753_51	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0002753_52	PHROG	phrog_19106	NA	unknown function
UHGV-0002753_52	UniRef90	UniRef90_R6FHE8	GIY-YIG domain-containing protein	NA
UHGV-0002753_52	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0002753_52	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0002753_52	Structural annotation	TIGR01453	NA	NA
UHGV-0002753_53	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0002753_53	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0002753_54	PHROG	phrog_1029	NA	unknown function
UHGV-0002753_54	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0002753_54	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0002753_54	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0002753_55	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0002753_55	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0002753_55	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0002753_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0002753_55	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0002753_56	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0002753_56	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0002753_56	UniRef90	UniRef90_A0A1G9IRX1	DNA replication protein DnaC	NA
UHGV-0002753_56	eggNOG-mapper	1476973.JMMB01000007_gene1880	Bacterial dnaA protein	NA
UHGV-0002753_56	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0002753_56	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0002753_56	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0002753_58	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0002753_58	UniRef90	UniRef90_J9GA63	Prophage antirepressor-related protein	NA
UHGV-0002753_58	eggNOG-mapper	642492.Clole_2799	Prophage antirepressor	NA
UHGV-0002753_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002753_58	COG	COG3617	Prophage antirepressor	NA
UHGV-0002753_58	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0002753_59	UniRef90	UniRef90_A0A174ECN7	XRE family transcriptional regulator	NA
UHGV-0002753_59	eggNOG-mapper	767817.Desgi_2502	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0002753_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0002753_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0002753_61	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0002753_61	UniRef90	UniRef90_UPI0005C7AC75	phage antirepressor KilAC domain-containing protein	NA
UHGV-0002753_61	eggNOG-mapper	180332.JTGN01000008_gene4114	BRO family, N-terminal domain	NA
UHGV-0002753_61	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002753_61	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0002753_61	COG	COG3617	Prophage antirepressor	NA
UHGV-0002753_61	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0002753_62	PHROG	phrog_17690	NA	unknown function
UHGV-0002753_64	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0002753_64	UniRef90	UniRef90_A0A3R6KVD6	Helix-turn-helix domain-containing protein	NA
UHGV-0002753_64	eggNOG-mapper	1235799.C818_02710	Excisionase from transposon Tn916	NA
UHGV-0002753_64	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0002753_64	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0002753_65	KOfam	K14059	int; integrase	NA
UHGV-0002753_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0002753_65	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0002753_65	eggNOG-mapper	742733.HMPREF9469_03088	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0002753_65	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0002753_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0002753_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0002753_65	Structural annotation	PF00589, PF14659, PF02920, MF_02055, TIGR02225, COG4974	NA	NA