UHGV-0002838

Genome information

vOTU vOTU-020681

Genome length 37,119 bps

CDS count 57

Completeness 81.96% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0002838
vOTU ID	vOTU-020681
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_B_8_2155__NODE_947_length_43142_cov_5.170858_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.01
Jumbo phage	No

Genome content
Genome length	37,119 bps
GC content	43.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.59%
Average CDS length	599.79 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002838_1	PHROG	phrog_9589	endolysin	lysis
UHGV-0002838_1	UniRef90	UniRef90_UPI001D05F489	CHAP domain-containing protein	NA
UHGV-0002838_1	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0002838_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0002838_1	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0002838_2	PHROG	phrog_6616	tail protein	tail
UHGV-0002838_2	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0002838_2	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0002838_2	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0002838_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0002838_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0002838_4	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0002838_4	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0002838_4	COG	COG1511	NA	NA
UHGV-0002838_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0002838_5	PHROG	phrog_706	NA	unknown function
UHGV-0002838_5	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0002838_5	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0002838_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0002838_5	Structural annotation	PF06854	NA	NA
UHGV-0002838_6	PHROG	phrog_11299	NA	unknown function
UHGV-0002838_6	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0002838_6	Structural annotation	PF10666	NA	NA
UHGV-0002838_7	PHROG	phrog_3099	NA	unknown function
UHGV-0002838_7	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0002838_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0002838_8	PHROG	phrog_3266	tail completion	connector
UHGV-0002838_8	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0002838_8	Structural annotation	PF12691	NA	NA
UHGV-0002838_9	PHROG	phrog_3366	NA	unknown function
UHGV-0002838_9	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0002838_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0002838_10	PHROG	phrog_8680	NA	unknown function
UHGV-0002838_10	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0002838_10	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0002838_10	Pfam	PF14386	NA	DUF4417
UHGV-0002838_10	Structural annotation	PF14386	NA	NA
UHGV-0002838_11	PHROG	phrog_9479	NA	unknown function
UHGV-0002838_11	Structural annotation	PF15529	NA	NA
UHGV-0002838_12	PHROG	phrog_1129	holin	lysis
UHGV-0002838_12	UniRef90	UniRef90_UPI001C0EA78A	phage holin family protein	NA
UHGV-0002838_12	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0002838_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0002838_12	Structural annotation	PF06946	NA	NA
UHGV-0002838_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0002838_13	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0002838_13	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0002838_13	Structural annotation	PF14359	NA	NA
UHGV-0002838_14	PHROG	phrog_918	NA	unknown function
UHGV-0002838_14	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-0002838_14	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0002838_14	Pfam	PF19791	NA	DUF6275
UHGV-0002838_14	Structural annotation	PF19791	NA	NA
UHGV-0002838_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0002838_16	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0002838_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-0002838_17	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0002838_17	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0002838_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0002838_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0002838_18	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0002838_18	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0002838_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0002838_19	UniRef90	UniRef90_UPI001C0EBD45	CTP synthase	NA
UHGV-0002838_19	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0002838_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0002838_20	UniRef90	UniRef90_UPI001C0EDE82	phage minor capsid protein	NA
UHGV-0002838_20	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0002838_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0002838_20	COG	COG2369	NA	NA
UHGV-0002838_20	Structural annotation	PF06152	NA	NA
UHGV-0002838_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0002838_21	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0002838_21	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0002838_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0002838_21	Structural annotation	PF11114	NA	NA
UHGV-0002838_22	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0002838_22	PHROG	phrog_7158	NA	unknown function
UHGV-0002838_22	UniRef90	UniRef90_UPI000F0AFADB	metallophosphoesterase	NA
UHGV-0002838_22	eggNOG-mapper	1501230.ET33_05810	Calcineurin-like phosphoesterase	NA
UHGV-0002838_22	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0002838_22	Structural annotation	PF12850, PF10014, MF_00905, NF008359, COG5555	NA	NA
UHGV-0002838_23	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0002838_23	UniRef90	UniRef90_UPI001C0E93C5	Ig-like domain-containing protein	NA
UHGV-0002838_23	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0002838_23	COG	COG4085	DNA/RNA endonuclease YhcR, contains UshA esterase domain	NA
UHGV-0002838_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0002838_24	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0002838_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0002838_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0002838_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0002838_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0002838_26	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0002838_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0002838_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0002838_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0002838_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0002838_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0002838_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0002838_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0002838_27	UniRef90	UniRef90_A0A416ZL36	Terminase small subunit	NA
UHGV-0002838_27	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0002838_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0002838_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0002838_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0002838_28	PHROG	phrog_33130	NA	unknown function
UHGV-0002838_28	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0002838_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0002838_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0002838_29	UniRef90	UniRef90_A0A414EGC7	XRE family transcriptional regulator	NA
UHGV-0002838_29	eggNOG-mapper	883081.HMPREF9698_00677	sequence-specific DNA binding	NA
UHGV-0002838_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0002838_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0002838_29	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-0002838_30	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0002838_33	PHROG	phrog_8684	NA	unknown function
UHGV-0002838_33	UniRef90	UniRef90_G5HEN9	YopX domain-containing protein	NA
UHGV-0002838_33	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0002838_33	Pfam	PF09643	YopX protein	YopX
UHGV-0002838_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0002838_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0002838_34	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0002838_35	PHROG	phrog_20593	NA	unknown function
UHGV-0002838_39	PHROG	phrog_15198	NA	unknown function
UHGV-0002838_39	UniRef90	UniRef90_K1T9Q6	NA	NA
UHGV-0002838_39	Pfam	PF04448	NA	DUF551
UHGV-0002838_41	PHROG	phrog_4601	NA	unknown function
UHGV-0002838_41	Structural annotation	PF17888	NA	NA
UHGV-0002838_43	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0002838_43	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-0002838_43	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0002838_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0002838_43	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0002838_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0002838_43	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0002838_45	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0002838_45	eggNOG-mapper	97139.C824_02817	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0002838_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0002838_45	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0002838_46	PHROG	phrog_4601	NA	unknown function
UHGV-0002838_47	PHROG	phrog_17690	NA	unknown function
UHGV-0002838_47	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0002838_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0002838_49	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0002838_49	UniRef90	UniRef90_UPI001D06D025	ATP-binding protein	NA
UHGV-0002838_49	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0002838_49	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0002838_49	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0002838_49	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0002838_50	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0002838_50	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0002838_50	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0002838_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0002838_50	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0002838_51	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0002838_51	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0002838_51	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0002838_52	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0002838_52	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0002838_52	UniRef90	UniRef90_A0A415L5D0	Recombinase RecT	NA
UHGV-0002838_52	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0002838_52	Pfam	PF03837	RecT family	RecT
UHGV-0002838_52	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0002838_52	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0002838_52	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0002838_53	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0002838_53	UniRef90	UniRef90_A0A415L5E5	Endonuclease	NA
UHGV-0002838_53	eggNOG-mapper	97139.C824_05807	YqaJ-like viral recombinase domain	NA
UHGV-0002838_53	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0002838_53	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0002838_53	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0002838_53	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0002838_56	UniRef90	UniRef90_UPI0015705952	toxin HipA	NA
UHGV-0002838_56	eggNOG-mapper	478749.BRYFOR_05417	NA	NA