UHGV-0003111

Genome information

Genome length 43,024 bps

CDS count 60

Completeness 58.55% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003111
vOTU ID	vOTU-030810
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_I_4_1118__NODE_427_length_77429_cov_4.802087_1
BioSample	SAMEA4765578
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.94
Jumbo phage	No

Genome content
Genome length	43,024 bps
GC content	62.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.78%
Average CDS length	675.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003111_4	PHROG	phrog_289	GTP-binding domain	other
UHGV-0003111_4	UniRef90	UniRef90_UPI001C2B89B9	SLOG family protein	NA
UHGV-0003111_4	eggNOG-mapper	1356854.N007_05300	NA	NA
UHGV-0003111_4	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0003111_4	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0003111_4	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0003111_10	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003111_10	UniRef90	UniRef90_A0A7X7SCU2	PD-(D/E)XK nuclease family protein	NA
UHGV-0003111_10	eggNOG-mapper	1382304.JNIL01000001_gene3509	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0003111_10	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0003111_10	COG	COG2887	RecB family exonuclease	NA
UHGV-0003111_10	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0003111_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0003111_11	UniRef90	UniRef90_A0A7X7P4N6	ATP-binding protein	NA
UHGV-0003111_11	eggNOG-mapper	1392502.JNIO01000008_gene1494	AAA domain	NA
UHGV-0003111_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0003111_14	UniRef90	UniRef90_A0A1J4V7H4	ParB domain-containing protein	NA
UHGV-0003111_14	eggNOG-mapper	351016.RAZWK3B_14868	DNA binding	NA
UHGV-0003111_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003111_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0003111_17	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0003111_17	UniRef90	UniRef90_UPI00189C6FDE	methyltransferase	NA
UHGV-0003111_17	eggNOG-mapper	1316932.MHH_c17120	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0003111_17	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0003111_17	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0003111_17	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0003111_17	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0003111_18	PHROG	phrog_625	NA	unknown function
UHGV-0003111_18	UniRef90	UniRef90_A0A842RVH7	ASCH domain-containing protein	NA
UHGV-0003111_21	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0003111_21	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0003111_21	UniRef90	UniRef90_B4D2R4	Type III restriction protein res subunit	NA
UHGV-0003111_21	eggNOG-mapper	497964.CfE428DRAFT_3202	Type III restriction enzyme res subunit	NA
UHGV-0003111_21	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0003111_21	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0003111_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0003111_21	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0003111_21	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0003111_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0003111_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0003111_25	UniRef90	UniRef90_A0A2N2MVK1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0003111_25	eggNOG-mapper	1227457.C451_19523	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0003111_25	PADLOC	DruM2_00008	DNA cytosine methylase	Druantia
UHGV-0003111_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0003111_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0003111_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0003111_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0003111_26	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0003111_26	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-0003111_26	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-0003111_26	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0003111_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0003111_26	COG	COG0863	DNA modification methylase	NA
UHGV-0003111_26	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0003111_27	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0003111_27	UniRef90	UniRef90_A0A7T5CJK0	Toprim domain-containing protein	NA
UHGV-0003111_27	eggNOG-mapper	264732.Moth_0358	NA	NA
UHGV-0003111_27	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0003111_28	PHROG	phrog_2509	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0003111_28	eggNOG-mapper	517433.PanABDRAFT_3691	sty2063 SWALL Q8Z5Z8 (EMBL AL627272) (262 aa) fasta scores E() 1.5e-07, 24.43 id in 266 aa, and to Escherichia coli O157 H7	NA
UHGV-0003111_29	eggNOG-mapper	1286631.X805_23640	NA	NA
UHGV-0003111_31	eggNOG-mapper	665942.HMPREF1022_00986	NA	NA
UHGV-0003111_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0003111_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0003111_32	UniRef90	UniRef90_A0A356J465	Terminase_3 domain-containing protein	NA
UHGV-0003111_32	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0003111_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0003111_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0003111_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0003111_33	PHROG	phrog_145	portal protein	head and packaging
UHGV-0003111_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0003111_36	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0003111_36	UniRef90	UniRef90_A0A3D1UET0	TMP_3 domain-containing protein	NA
UHGV-0003111_36	eggNOG-mapper	1540257.JQMW01000013_gene731	Phage tail tape measure protein, TP901 family	NA
UHGV-0003111_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0003111_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0003111_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0003111_50	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0003111_50	eggNOG-mapper	118005.AWNK01000018_gene940	NA	NA
UHGV-0003111_50	Pfam	PF07087	NA	DUF1353
UHGV-0003111_53	Structural annotation	PF06810	NA	NA
UHGV-0003111_54	PHROG	phrog_247	major head protein	head and packaging
UHGV-0003111_54	UniRef90	UniRef90_UPI001C385014	major capsid protein	NA
UHGV-0003111_54	eggNOG-mapper	1031288.AXAA01000048_gene768	NA	NA
UHGV-0003111_54	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0003111_54	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0003111_58	PHROG	phrog_33618	NA	unknown function
UHGV-0003111_58	UniRef90	UniRef90_A0A3D1UDS0	Gln_amidase domain-containing protein	NA
UHGV-0003111_58	eggNOG-mapper	2754.EH55_07975	cell adhesion	NA
UHGV-0003111_58	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0003111_58	COG	COG2369	NA	NA
UHGV-0003111_60	KOfam	K14059	int; integrase	NA
UHGV-0003111_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0003111_60	UniRef90	UniRef90_A0A8J7TXU2	Site-specific integrase	NA
UHGV-0003111_60	eggNOG-mapper	1210884.HG799469_gene14265	Belongs to the 'phage' integrase family	NA
UHGV-0003111_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0003111_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA