UHGV-0003366

Genome information

Genome length 31,272 bps

CDS count 50

Completeness 88.05% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003366
vOTU ID	vOTU-033903
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_E_17_1054__NODE_18_length_434057_cov_14.601053_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.05
Jumbo phage	No

Genome content
Genome length	31,272 bps
GC content	42.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	95.08%
Average CDS length	598.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003366_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0003366_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0003366_1	UniRef90	UniRef90_UPI001B3918A3	helix-turn-helix domain-containing protein	NA
UHGV-0003366_1	eggNOG-mapper	97138.C820_00275	Helix-turn-helix XRE-family like proteins	NA
UHGV-0003366_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0003366_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0003366_1	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0003366_2	UniRef90	UniRef90_C7G6N8	DNA-binding helix-turn-helix protein	NA
UHGV-0003366_2	eggNOG-mapper	1226325.HMPREF1548_00560	NA	NA
UHGV-0003366_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0003366_2	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0003366_6	PHROG	phrog_6058	NA	unknown function
UHGV-0003366_6	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0003366_6	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0003366_6	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0003366_7	PHROG	phrog_20014	NA	unknown function
UHGV-0003366_7	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0003366_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0003366_9	PHROG	phrog_26861	NA	unknown function
UHGV-0003366_9	UniRef90	UniRef90_A0A174WND2	Helix-destabilizing protein	NA
UHGV-0003366_9	eggNOG-mapper	658655.HMPREF0988_01841	Single-strand binding protein family	NA
UHGV-0003366_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0003366_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0003366_9	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0003366_11	PHROG	phrog_24386	NA	unknown function
UHGV-0003366_11	eggNOG-mapper	622312.ROSEINA2194_03445	phosphatase activity	NA
UHGV-0003366_11	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0003366_12	PHROG	phrog_24368	NA	unknown function
UHGV-0003366_12	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0003366_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0003366_13	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0003366_13	Structural annotation	PF21578	NA	NA
UHGV-0003366_14	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0003366_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0003366_14	UniRef90	UniRef90_UPI000674F94E	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0003366_14	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0003366_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0003366_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0003366_14	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0003366_15	UniRef90	UniRef90_UPI00059FC1F8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0003366_15	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0003366_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0003366_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0003366_18	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0003366_18	UniRef90	UniRef90_A0A3R5XSQ0	SAM-dependent methyltransferase	NA
UHGV-0003366_18	eggNOG-mapper	1145276.T479_16310	methyltransferase	NA
UHGV-0003366_18	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0003366_18	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0003366_18	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0003366_18	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0003366_19	Structural annotation	PF14120, MF_00273, NF001981, COG2157	NA	NA
UHGV-0003366_21	PHROG	phrog_824	NA	unknown function
UHGV-0003366_21	UniRef90	UniRef90_A0A3A9F823	VRR-NUC domain-containing protein	NA
UHGV-0003366_21	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0003366_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0003366_21	Structural annotation	PF08774	NA	NA
UHGV-0003366_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0003366_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0003366_22	UniRef90	UniRef90_UPI001C0C6936	ParA family protein	NA
UHGV-0003366_22	eggNOG-mapper	642492.Clole_0729	AAA domain	NA
UHGV-0003366_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0003366_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0003366_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0003366_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0003366_23	PHROG	phrog_15982	NA	unknown function
UHGV-0003366_23	UniRef90	UniRef90_UPI001D07CD5B	ParB N-terminal domain-containing protein	NA
UHGV-0003366_23	eggNOG-mapper	411902.CLOBOL_03889	ParB-like nuclease domain	NA
UHGV-0003366_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003366_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0003366_23	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0003366_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0003366_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0003366_27	UniRef90	UniRef90_A0A3A9F3L6	Single-stranded DNA-binding protein	NA
UHGV-0003366_27	eggNOG-mapper	411474.COPEUT_01783	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0003366_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0003366_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0003366_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0003366_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0003366_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0003366_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0003366_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003366_28	UniRef90	UniRef90_UPI001D07BB57	HNH endonuclease	NA
UHGV-0003366_28	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0003366_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0003366_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0003366_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0003366_29	UniRef90	UniRef90_UPI001D06BD2A	P27 family phage terminase small subunit	NA
UHGV-0003366_29	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0003366_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0003366_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0003366_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0003366_30	UniRef90	UniRef90_UPI001D05EE8F	terminase large subunit	NA
UHGV-0003366_30	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0003366_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0003366_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0003366_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0003366_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0003366_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0003366_31	UniRef90	UniRef90_UPI001C0B5E3A	phage portal protein	NA
UHGV-0003366_31	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0003366_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0003366_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0003366_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0003366_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0003366_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0003366_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0003366_32	UniRef90	UniRef90_UPI001D089594	Clp protease ClpP	NA
UHGV-0003366_32	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0003366_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0003366_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0003366_32	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0003366_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0003366_33	UniRef90	UniRef90_UPI001D075B31	phage major capsid protein	NA
UHGV-0003366_33	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0003366_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0003366_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0003366_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0003366_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0003366_34	PHROG	phrog_749	NA	unknown function
UHGV-0003366_34	UniRef90	UniRef90_UPI0007B3B3B7	phage head-tail connector protein	NA
UHGV-0003366_34	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0003366_35	PHROG	phrog_19734	NA	unknown function
UHGV-0003366_35	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0003366_35	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0003366_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0003366_36	eggNOG-mapper	1415774.U728_1249	NA	NA
UHGV-0003366_36	Structural annotation	TIGR01725	NA	NA
UHGV-0003366_38	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0003366_38	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0003366_39	Structural annotation	PF06222	NA	NA
UHGV-0003366_40	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0003366_41	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0003366_41	UniRef90	UniRef90_A0A174WW30	Phage-related protein	NA
UHGV-0003366_41	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-0003366_41	COG	COG5412	Phage-related protein	NA
UHGV-0003366_41	Structural annotation	PF16591	NA	NA
UHGV-0003366_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0003366_42	UniRef90	UniRef90_A0A174WNI0	Phage tail protein	NA
UHGV-0003366_42	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0003366_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0003366_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0003366_42	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0003366_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0003366_43	UniRef90	UniRef90_UPI001D05F61F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0003366_43	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0003366_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0003366_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0003366_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0003366_44	PHROG	phrog_1220	head protein	head and packaging
UHGV-0003366_44	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0003366_44	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-0003366_44	Structural annotation	PF13620, PF20747	NA	NA
UHGV-0003366_45	PHROG	phrog_5302	tail protein	tail
UHGV-0003366_45	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0003366_45	Structural annotation	PF16323, COG3979	NA	NA
UHGV-0003366_47	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0003366_48	PHROG	phrog_199	holin	lysis
UHGV-0003366_48	UniRef90	UniRef90_UPI001D08D7FC	phage holin family protein	NA
UHGV-0003366_48	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-0003366_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0003366_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0003366_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0003366_49	eggNOG-mapper	397290.C810_00439	NA	NA
UHGV-0003366_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0003366_50	PHROG	phrog_1794	amidase	lysis
UHGV-0003366_50	UniRef90	UniRef90_UPI001C0DDDE3	peptidoglycan recognition protein family protein	NA
UHGV-0003366_50	eggNOG-mapper	665950.HMPREF1025_01587	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0003366_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0003366_50	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0003366_50	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0003366_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0003366_50	Structural annotation	PF01510, PF18013, MF_04111, NF008758, COG5632, COG4991	NA	NA