UHGV-0003503

Genome information

Genome length 37,023 bps

CDS count 56

Completeness 83.15% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003503
vOTU ID	vOTU-033921
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_8_1096__NODE_1171_length_64605_cov_11.569505_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.62
Jumbo phage	No

Genome content
Genome length	37,023 bps
GC content	41.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.69%
Average CDS length	616.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003503_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0003503_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0003503_2	UniRef90	UniRef90_UPI0011DE2A43	recombinase family protein	NA
UHGV-0003503_2	eggNOG-mapper	742723.HMPREF9477_00942	Resolvase, N terminal domain	NA
UHGV-0003503_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0003503_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0003503_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0003503_2	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0003503_3	PHROG	phrog_1847	NA	unknown function
UHGV-0003503_3	UniRef90	UniRef90_UPI001E30C708	GIY-YIG nuclease family protein	NA
UHGV-0003503_3	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0003503_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0003503_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0003503_3	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0003503_4	PHROG	phrog_20886	NA	unknown function
UHGV-0003503_4	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0003503_4	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0003503_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0003503_4	Structural annotation	PF06114	NA	NA
UHGV-0003503_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0003503_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0003503_5	UniRef90	UniRef90_A0A7X5ITH0	XRE family transcriptional regulator	NA
UHGV-0003503_5	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0003503_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0003503_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0003503_6	UniRef90	UniRef90_UPI00156E5644	helix-turn-helix domain-containing protein	NA
UHGV-0003503_6	eggNOG-mapper	1211817.CCAT010000003_gene273	transcriptional regulator	NA
UHGV-0003503_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0003503_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0003503_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0003503_9	COG	COG3583	NA	NA
UHGV-0003503_9	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0003503_11	PHROG	phrog_1499	NA	unknown function
UHGV-0003503_11	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0003503_11	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0003503_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0003503_11	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0003503_11	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0003503_12	PHROG	phrog_3657	NA	unknown function
UHGV-0003503_12	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0003503_12	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0003503_13	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003503_13	UniRef90	UniRef90_A0A316M6N2	NA	NA
UHGV-0003503_13	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0003503_13	Pfam	PF12684	NA	DUF3799
UHGV-0003503_13	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0003503_13	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0003503_14	PHROG	phrog_7566	NA	unknown function
UHGV-0003503_14	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0003503_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0003503_15	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0003503_15	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0003503_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0003503_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0003503_16	PHROG	phrog_2113	NA	unknown function
UHGV-0003503_17	PHROG	phrog_15768	NA	unknown function
UHGV-0003503_17	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0003503_17	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0003503_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0003503_18	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003503_18	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0003503_18	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0003503_18	Structural annotation	PF13613, NF040595, COG2771	NA	NA
UHGV-0003503_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0003503_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0003503_19	UniRef90	UniRef90_A0A316M8X6	PAPS_reduct domain-containing protein	NA
UHGV-0003503_19	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0003503_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0003503_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0003503_19	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0003503_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0003503_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0003503_20	UniRef90	UniRef90_A0A316MA86	DNA methylase N-4	NA
UHGV-0003503_20	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0003503_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0003503_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0003503_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0003503_20	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0003503_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0003503_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0003503_21	UniRef90	UniRef90_A0A3R6DF97	Cytosine-specific methyltransferase	NA
UHGV-0003503_21	eggNOG-mapper	1499683.CCFF01000005_gene54	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0003503_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0003503_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0003503_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0003503_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0003503_21	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0003503_26	UniRef90	UniRef90_UPI001D064D4E	NA	NA
UHGV-0003503_26	Pfam	PF04448	NA	DUF551
UHGV-0003503_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0003503_28	UniRef90	UniRef90_UPI00046706B5	transposase	NA
UHGV-0003503_28	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-0003503_28	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0003503_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0003503_28	Structural annotation	PF07141	NA	NA
UHGV-0003503_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0003503_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0003503_29	UniRef90	UniRef90_UPI0014300831	phage terminase large subunit	NA
UHGV-0003503_29	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0003503_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0003503_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0003503_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0003503_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0003503_30	UniRef90	UniRef90_A0A1C5VVD0	Phage portal protein, putative, A118 family	NA
UHGV-0003503_30	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0003503_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0003503_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0003503_31	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0003503_31	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0003503_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0003503_31	COG	COG2369	NA	NA
UHGV-0003503_31	Structural annotation	PF06152	NA	NA
UHGV-0003503_32	Structural annotation	PF11344	NA	NA
UHGV-0003503_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0003503_34	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0003503_34	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0003503_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0003503_34	Structural annotation	PF06810	NA	NA
UHGV-0003503_35	PHROG	phrog_267	major head protein	head and packaging
UHGV-0003503_35	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0003503_35	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0003503_35	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0003503_35	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0003503_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0003503_37	PHROG	phrog_3366	NA	unknown function
UHGV-0003503_37	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0003503_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0003503_38	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0003503_38	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0003503_38	Structural annotation	PF11114	NA	NA
UHGV-0003503_39	PHROG	phrog_3266	tail completion	connector
UHGV-0003503_39	Structural annotation	PF12691	NA	NA
UHGV-0003503_40	PHROG	phrog_3099	NA	unknown function
UHGV-0003503_40	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0003503_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0003503_41	Structural annotation	PF20378	NA	NA
UHGV-0003503_42	PHROG	phrog_706	NA	unknown function
UHGV-0003503_42	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0003503_42	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0003503_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0003503_42	Structural annotation	PF06854	NA	NA
UHGV-0003503_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0003503_43	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0003503_43	COG	COG5412	Phage-related protein	NA
UHGV-0003503_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0003503_44	UniRef90	UniRef90_A0A1C5VV34	Phage-related protein	NA
UHGV-0003503_44	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0003503_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0003503_44	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0003503_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0003503_45	UniRef90	UniRef90_UPI00164C9B03	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0003503_45	eggNOG-mapper	1120746.CCNL01000017_gene2788	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0003503_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0003503_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0003503_46	PHROG	phrog_1220	head protein	head and packaging
UHGV-0003503_46	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0003503_46	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0003503_48	UniRef90	UniRef90_UPI0011868A0C	acyl carrier protein	NA
UHGV-0003503_48	eggNOG-mapper	397291.C804_01137	NA	NA
UHGV-0003503_48	Structural annotation	PF14301	NA	NA
UHGV-0003503_49	PHROG	phrog_20274	NA	unknown function
UHGV-0003503_49	UniRef90	UniRef90_D7GNX6	Predicted membrane protein	NA
UHGV-0003503_49	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0003503_49	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0003503_49	COG	COG4905	NA	NA
UHGV-0003503_49	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0003503_50	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0003503_50	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0003503_52	PHROG	phrog_34925	NA	unknown function
UHGV-0003503_52	UniRef90	UniRef90_A0A7X5C663	Aminopeptidase	NA
UHGV-0003503_52	eggNOG-mapper	478749.BRYFOR_07563	NA	NA
UHGV-0003503_52	Structural annotation	PF06946	NA	NA
UHGV-0003503_55	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0003503_55	PHROG	phrog_3513	endolysin	lysis
UHGV-0003503_55	UniRef90	UniRef90_R7N6M9	LYZ2 domain-containing protein	NA
UHGV-0003503_55	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-0003503_55	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0003503_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0003503_55	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0003503_55	Structural annotation	PF01471, PF01832, NF038016, COG1705, COG3409	NA	NA
UHGV-0003503_56	eggNOG-mapper	1235800.C819_00727	NMT1-like family	NA
UHGV-0003503_56	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA