| Genome information | |
|---|---|
| Genome ID | UHGV-0003553 |
| vOTU ID | vOTU-043176 |
| vOTU representative | No |
| Source dataset | Hadza |
| Original genome ID | Hadza_MoBio_hadza-A-D_O_4_1196__NODE_412_length_114086_cov_5.560579_1 |
| BioSample | SAMEA4765655 |
| Country | Tanzania |
| Virus prediction confidence | Confident |
| Quality assessment | |
|---|---|
| CheckV method | AAI-based |
| CheckV completeness | 62.95% (medium-quality) |
| CheckV contamination | 0.00% |
| Trimmed provirus | No |
| CheckV viral markers | 21 |
| CheckV host markers | 10 |
| Recoded stop codon | No |
| Viral signal | |
|---|---|
| geNomad score | 0.9729 |
| Virus hallmark genes (geNomad) | 3 |
| Plasmid hallmark genes (geNomad) | 0 |
| viralVerify prediction | Uncertain - plasmid or chromosomal |
| viralVerify score | 0.31 |
| Jumbo phage | No |
| Genome content | |
|---|---|
| Genome length | 108,535 bps |
| GC content | 35.47% |
| Genetic code | The standard bacterial, archaeal and plant plastid code (11) |
| CDS count | 127 |
| CDS density | 89.33% |
| Average CDS length | 765.31 bps |
| tRNA count | 21 |
| Suppressor tRNA genes | 0 |