UHGV-0003712

Genome information

Genome length 35,027 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003712
vOTU ID	vOTU-080981
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_15_1703__NODE_51_length_241661_cov_12.071420_1
BioSample	SAMEA4765983
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.56
Jumbo phage	No

Genome content
Genome length	35,027 bps
GC content	52.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.11%
Average CDS length	617.08 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003712_3	UniRef90	UniRef90_A0A316R7E8	RHH_1 domain-containing protein	NA
UHGV-0003712_3	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0003712_3	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0003712_5	KOfam	K14059	int; integrase	NA
UHGV-0003712_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0003712_5	UniRef90	UniRef90_A0A316RE68	Tyr recombinase domain-containing protein	NA
UHGV-0003712_5	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0003712_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0003712_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0003712_5	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0003712_6	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0003712_6	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0003712_6	UniRef90	UniRef90_A0A316R7F3	Exonuclease domain-containing protein	NA
UHGV-0003712_6	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0003712_6	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0003712_6	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0003712_6	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0003712_6	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0003712_7	PHROG	phrog_16443	NA	unknown function
UHGV-0003712_7	eggNOG-mapper	1118057.CAGX01000058_gene115	NA	NA
UHGV-0003712_8	PHROG	phrog_87	metallo-protease	other
UHGV-0003712_8	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-0003712_8	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0003712_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0003712_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0003712_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0003712_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0003712_9	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-0003712_9	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0003712_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0003712_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0003712_9	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0003712_10	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-0003712_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0003712_10	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0003712_11	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0003712_12	PHROG	phrog_33952	NA	unknown function
UHGV-0003712_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0003712_14	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0003712_14	Structural annotation	PF21578	NA	NA
UHGV-0003712_15	PHROG	phrog_34937	NA	unknown function
UHGV-0003712_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0003712_16	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0003712_16	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0003712_16	Pfam	PF06356	NA	DUF1064
UHGV-0003712_16	Structural annotation	PF06356	NA	NA
UHGV-0003712_18	PHROG	phrog_15198	NA	unknown function
UHGV-0003712_18	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0003712_18	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0003712_18	Pfam	PF04448	NA	DUF551
UHGV-0003712_19	PHROG	phrog_4704	tail length tape measure protein	tail
UHGV-0003712_19	eggNOG-mapper	748727.CLJU_c31220	phage tail tape measure protein	NA
UHGV-0003712_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0003712_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0003712_21	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0003712_21	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0003712_22	PHROG	phrog_8470	NA	unknown function
UHGV-0003712_22	UniRef90	UniRef90_UPI001C0AE9DA	PcfJ domain-containing protein	NA
UHGV-0003712_22	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0003712_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0003712_22	Structural annotation	PF14284	NA	NA
UHGV-0003712_23	PHROG	phrog_15609	NA	unknown function
UHGV-0003712_23	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0003712_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0003712_27	PHROG	phrog_1558	NA	unknown function
UHGV-0003712_27	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0003712_27	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-0003712_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0003712_27	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0003712_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003712_28	UniRef90	UniRef90_A0A844FGQ3	HNH endonuclease	NA
UHGV-0003712_28	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0003712_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0003712_29	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-0003712_29	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0003712_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0003712_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0003712_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0003712_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0003712_30	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-0003712_30	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0003712_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0003712_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0003712_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0003712_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0003712_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0003712_31	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-0003712_31	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0003712_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0003712_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0003712_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0003712_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0003712_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0003712_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0003712_32	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-0003712_32	eggNOG-mapper	411468.CLOSCI_01490	Clp protease	NA
UHGV-0003712_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0003712_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0003712_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0003712_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0003712_33	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-0003712_33	eggNOG-mapper	1391647.AVSV01000039_gene1100	Phage major capsid protein, HK97 family	NA
UHGV-0003712_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0003712_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0003712_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0003712_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0003712_34	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-0003712_34	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0003712_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0003712_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0003712_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0003712_35	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-0003712_35	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0003712_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0003712_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0003712_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0003712_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0003712_36	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0003712_36	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0003712_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0003712_36	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0003712_37	PHROG	phrog_78	tail terminator	connector
UHGV-0003712_37	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0003712_37	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0003712_38	PHROG	phrog_88	major tail protein	tail
UHGV-0003712_38	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-0003712_38	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0003712_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0003712_38	COG	COG5492	NA	NA
UHGV-0003712_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0003712_39	PHROG	phrog_13494	NA	unknown function
UHGV-0003712_39	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-0003712_40	PHROG	phrog_25901	NA	unknown function
UHGV-0003712_40	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0003712_41	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0003712_41	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-0003712_41	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0003712_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0003712_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0003712_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0003712_42	UniRef90	UniRef90_UPI0019689066	phage tail protein	NA
UHGV-0003712_42	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0003712_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0003712_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0003712_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0003712_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0003712_43	PHROG	phrog_13289	tail protein	tail
UHGV-0003712_43	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-0003712_43	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0003712_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0003712_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0003712_43	COG	COG4926	Phage-related protein	NA
UHGV-0003712_44	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-0003712_44	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-0003712_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0003712_44	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0003712_45	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0003712_46	PHROG	phrog_4105	NA	unknown function
UHGV-0003712_46	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0003712_47	PHROG	phrog_263	holin	lysis
UHGV-0003712_47	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-0003712_47	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-0003712_47	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0003712_47	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0003712_47	Structural annotation	PF04688	NA	NA
UHGV-0003712_48	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-0003712_48	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0003712_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0003712_48	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-0003712_51	UniRef90	UniRef90_A0A1Y3WBI9	NA	NA
UHGV-0003712_51	eggNOG-mapper	411483.FAEPRAA2165_01527	NA	NA
UHGV-0003712_51	Pfam	PF14056	NA	DUF4250
UHGV-0003712_52	KOfam	K09698	gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]	NA
UHGV-0003712_52	PHROG	phrog_35649	NA	unknown function
UHGV-0003712_52	UniRef90	UniRef90_R6IYR7	Glutamate--tRNA ligase	NA
UHGV-0003712_52	eggNOG-mapper	445972.ANACOL_01720	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	NA
UHGV-0003712_52	Pfam	PF00749	tRNA synthetases class I (E and Q), catalytic domain	tRNA-synt_1c
UHGV-0003712_52	Pfam	PF19269	Anticodon binding domain	Anticodon_2
UHGV-0003712_52	NCBIFam	TIGR00464.1	glutamate--tRNA ligase	NA
UHGV-0003712_52	COG	COG0008	Glutamyl- or glutaminyl-tRNA synthetase	NA
UHGV-0003712_52	HAMAP	MF_00022	Glutamate--tRNA ligase [gltX]	NA