UHGV-0003824

Genome information

Genome length 19,715 bps

CDS count 25

Completeness 59.63% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003824
vOTU ID	vOTU-028751
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_F_16_1210__NODE_3621_length_34925_cov_11.751062_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.04
Jumbo phage	No

Genome content
Genome length	19,715 bps
GC content	40.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	96.60%
Average CDS length	768.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003824_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0003824_1	eggNOG-mapper	1200567.JNKD01000011_gene654	sigma factor activity	NA
UHGV-0003824_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0003824_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0003824_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0003824_3	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0003824_3	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0003824_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0003824_3	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0003824_4	UniRef90	UniRef90_A0A0X8VBF2	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0003824_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0003824_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0003824_5	UniRef90	UniRef90_A0A8E3MVJ2	Minor capsid protein	NA
UHGV-0003824_5	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0003824_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0003824_5	COG	COG2369	NA	NA
UHGV-0003824_5	Structural annotation	PF06152, PF18451	NA	NA
UHGV-0003824_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0003824_7	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0003824_7	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0003824_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0003824_10	Structural annotation	PF20536	NA	NA
UHGV-0003824_11	Structural annotation	PF16724	NA	NA
UHGV-0003824_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0003824_12	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0003824_12	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0003824_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0003824_12	Structural annotation	PF11114	NA	NA
UHGV-0003824_13	PHROG	phrog_3099	NA	unknown function
UHGV-0003824_13	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0003824_13	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0003824_14	PHROG	phrog_11299	NA	unknown function
UHGV-0003824_14	Structural annotation	PF10666	NA	NA
UHGV-0003824_15	PHROG	phrog_706	NA	unknown function
UHGV-0003824_15	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0003824_15	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0003824_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0003824_15	Structural annotation	PF06854	NA	NA
UHGV-0003824_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0003824_16	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0003824_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0003824_17	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0003824_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0003824_19	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-0003824_20	PHROG	phrog_22899	NA	unknown function
UHGV-0003824_20	Pfam	PF03382	NA	DUF285
UHGV-0003824_20	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0003824_20	Structural annotation	PF03382	NA	NA
UHGV-0003824_22	PHROG	phrog_937	hemolysin	other
UHGV-0003824_23	PHROG	phrog_263	holin	lysis
UHGV-0003824_23	UniRef90	UniRef90_UPI001F05AFD4	phage holin	NA
UHGV-0003824_23	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-0003824_23	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0003824_23	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0003824_23	Structural annotation	PF04688	NA	NA
UHGV-0003824_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0003824_24	PHROG	phrog_670	endolysin	lysis
UHGV-0003824_24	UniRef90	UniRef90_UPI0015A79365	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0003824_24	eggNOG-mapper	1499689.CCNN01000007_gene1846	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0003824_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0003824_24	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0003824_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0003824_24	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0003824_25	PHROG	phrog_1758	acetyltransferase	other
UHGV-0003824_25	UniRef90	UniRef90_I8RDG3	GCN5-related N-acetyltransferase	NA
UHGV-0003824_25	eggNOG-mapper	469618.FVAG_02009	NA	NA
UHGV-0003824_25	Structural annotation	PF02474, MF_02210, NF007025, COG0456	NA	NA