UHGV-0003876

Genome information

vOTU vOTU-020919

Genome length 38,513 bps

CDS count 66

Completeness 52.28% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-0003876
vOTU ID	vOTU-020919
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_H_1_1976__NODE_498_length_60026_cov_10.991843_1
BioSample	SAMEA4766137
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.51
Jumbo phage	No

Genome content
Genome length	38,513 bps
GC content	37.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.54%
Average CDS length	537.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0003876_7	Structural annotation	PF08605, MF_01194, NF010729	NA	NA
UHGV-0003876_10	Structural annotation	PF00436, MF_00984, TIGR04418, COG0629	NA	NA
UHGV-0003876_11	UniRef90	UniRef90_UPI001F4F1BDE	DNA-binding protein	NA
UHGV-0003876_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0003876_11	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0003876_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0003876_13	UniRef90	UniRef90_A0A6A7USY4	Phage portal protein	NA
UHGV-0003876_13	eggNOG-mapper	411901.BACCAC_01152	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0003876_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0003876_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0003876_14	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-0003876_14	UniRef90	UniRef90_A0A414FMD1	Gln_amidase domain-containing protein	NA
UHGV-0003876_14	eggNOG-mapper	679189.HMPREF9019_0952	NA	NA
UHGV-0003876_14	Structural annotation	PF06152	NA	NA
UHGV-0003876_16	UniRef90	UniRef90_A0A6A7UVT1	ANT domain-containing protein	NA
UHGV-0003876_16	eggNOG-mapper	469616.FMAG_01534	SOS response	NA
UHGV-0003876_16	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0003876_16	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0003876_16	Structural annotation	COG3645	NA	NA
UHGV-0003876_17	PHROG	phrog_21165	NA	unknown function
UHGV-0003876_17	UniRef90	UniRef90_UPI0018975219	NA	NA
UHGV-0003876_17	eggNOG-mapper	866536.Belba_0510	NA	NA
UHGV-0003876_17	PADLOC	Orf5_00015	Orf5	DND
UHGV-0003876_17	Pfam	PF03235	NA	DUF262
UHGV-0003876_17	Pfam	PF07510	NA	DUF1524
UHGV-0003876_17	COG	COG1479	NA	NA
UHGV-0003876_17	Structural annotation	PF03235, COG1479	NA	NA
UHGV-0003876_19	UniRef90	UniRef90_UPI001EDBAA8A	DpnD/PcfM family protein	NA
UHGV-0003876_19	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0003876_19	Structural annotation	PF14207	NA	NA
UHGV-0003876_21	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0003876_21	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0003876_21	UniRef90	UniRef90_A0A7K0AGH8	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0003876_21	eggNOG-mapper	1054968.G0X4X6_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0003876_21	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0003876_21	Structural annotation	PF01068, PF17879, MF_00407, NF006592, COG1793	NA	NA
UHGV-0003876_22	eggNOG-mapper	1392486.JIAF01000004_gene2652	NA	NA
UHGV-0003876_24	PHROG	phrog_18340	NA	unknown function
UHGV-0003876_24	UniRef90	UniRef90_A0A3N2L6J3	NA	NA
UHGV-0003876_24	eggNOG-mapper	445970.ALIPUT_02575	NA	NA
UHGV-0003876_24	Pfam	PF12957	NA	DUF3846
UHGV-0003876_24	Structural annotation	PF12957	NA	NA
UHGV-0003876_25	Structural annotation	PF20293, MF_00732, NF041852, COG3432	NA	NA
UHGV-0003876_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0003876_27	UniRef90	UniRef90_A0A7K0AJJ4	Phage terminase large subunit	NA
UHGV-0003876_27	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0003876_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0003876_27	COG	COG5410	NA	NA
UHGV-0003876_27	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0003876_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0003876_28	UniRef90	UniRef90_UPI001C379852	DNA-packaging protein	NA
UHGV-0003876_28	eggNOG-mapper	483215.BACFIN_07524	DNA-packaging protein gp3	NA
UHGV-0003876_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0003876_28	Structural annotation	PF16677	NA	NA
UHGV-0003876_29	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_29	UniRef90	UniRef90_A0A3C0D745	ParB domain-containing protein	NA
UHGV-0003876_29	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0003876_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0003876_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003876_29	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0003876_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0003876_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_30	UniRef90	UniRef90_A0A7K0AIL4	ParB domain-containing protein	NA
UHGV-0003876_30	eggNOG-mapper	762984.HMPREF9445_00165	chromosome segregation	NA
UHGV-0003876_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0003876_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003876_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0003876_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG5119	NA	NA
UHGV-0003876_31	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_31	UniRef90	UniRef90_A0A6A7UPP7	ParB-like nuclease domain-containing protein	NA
UHGV-0003876_31	eggNOG-mapper	762984.HMPREF9445_00164	NA	NA
UHGV-0003876_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003876_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0003876_31	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0003876_32	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0003876_32	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0003876_32	UniRef90	UniRef90_A0A3C0D8M4	PAPS_reduct domain-containing protein	NA
UHGV-0003876_32	eggNOG-mapper	762984.HMPREF9445_00163	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0003876_32	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0003876_32	COG	COG3969	NA	NA
UHGV-0003876_32	Structural annotation	PF01507, PF11922, MF_00063, NF006327, COG3969	NA	NA
UHGV-0003876_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0003876_34	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_34	UniRef90	UniRef90_A0A6A7UPG9	ParB domain-containing protein	NA
UHGV-0003876_34	eggNOG-mapper	335541.Swol_2569	Belongs to the ParB family	NA
UHGV-0003876_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0003876_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0003876_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0003876_34	Structural annotation	PF02195, TIGR04285, COG1475	NA	NA
UHGV-0003876_36	UniRef90	UniRef90_A0A1H6M1F4	S-adenosyl-l-methionine-dependent methyltransferase	NA
UHGV-0003876_36	eggNOG-mapper	107636.JQNK01000009_gene1996	NA	NA
UHGV-0003876_36	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0003876_37	KOfam	K17462	yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-]	NA
UHGV-0003876_37	UniRef90	UniRef90_A0A3C0D6M0	Methyltransf_25 domain-containing protein	NA
UHGV-0003876_37	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0003876_37	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0003876_37	Structural annotation	PF01209, MF_02100, TIGR01934, COG2226	NA	NA
UHGV-0003876_38	eggNOG-mapper	1047013.AQSP01000127_gene500	NA	NA
UHGV-0003876_38	Structural annotation	PF05891, MF_02100, TIGR03587, COG4976	NA	NA
UHGV-0003876_40	PHROG	phrog_8470	NA	unknown function
UHGV-0003876_40	UniRef90	UniRef90_UPI001B8CE2D4	PcfJ domain-containing protein	NA
UHGV-0003876_40	eggNOG-mapper	879243.Poras_1549	PcfJ-like protein	NA
UHGV-0003876_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0003876_40	Structural annotation	PF14284	NA	NA
UHGV-0003876_41	PHROG	phrog_7445	NA	unknown function
UHGV-0003876_41	UniRef90	UniRef90_A0A1I4E790	PcfK-like protein	NA
UHGV-0003876_41	eggNOG-mapper	1236504.HMPREF2132_00350	PcfK-like protein	NA
UHGV-0003876_41	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0003876_41	Structural annotation	PF14058	NA	NA
UHGV-0003876_43	PHROG	phrog_32703	NA	unknown function
UHGV-0003876_43	UniRef90	UniRef90_E6K6R6	NA	NA
UHGV-0003876_43	eggNOG-mapper	563008.HMPREF0665_01220	DNA restriction-modification system	NA
UHGV-0003876_43	Pfam	PF13708	NA	DUF4942
UHGV-0003876_43	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0003876_43	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-0003876_45	Structural annotation	PF18300	NA	NA
UHGV-0003876_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0003876_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0003876_56	UniRef90	UniRef90_A0A6A7VTE7	DNA helicase	NA
UHGV-0003876_56	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0003876_56	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0003876_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0003876_56	COG	COG0305	Replicative DNA helicase	NA
UHGV-0003876_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0003876_57	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0003876_57	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0003876_57	UniRef90	UniRef90_A0A6A7UPD3	Bac_DnaA domain-containing protein	NA
UHGV-0003876_57	eggNOG-mapper	445970.ALIPUT_02688	NA	NA
UHGV-0003876_57	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-0003876_58	PHROG	phrog_38715	NA	unknown function
UHGV-0003876_58	eggNOG-mapper	511437.Lbuc_1442	NA	NA
UHGV-0003876_58	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0003876_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0003876_59	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0003876_59	UniRef90	UniRef90_A0A6A7UPH5	Recombinase	NA
UHGV-0003876_59	eggNOG-mapper	679189.HMPREF9019_0919	NA	NA
UHGV-0003876_59	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0003876_59	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0003876_59	Structural annotation	PF05766	NA	NA
UHGV-0003876_61	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0003876_61	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0003876_61	UniRef90	UniRef90_A0A6A7UPC9	DEAD/DEAH box helicase	NA
UHGV-0003876_61	eggNOG-mapper	679189.HMPREF9019_0914	Helicase C-terminal domain protein	NA
UHGV-0003876_61	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0003876_61	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0003876_61	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0003876_61	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0003876_61	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0003876_62	PHROG	phrog_26490	NA	unknown function
UHGV-0003876_62	eggNOG-mapper	679189.HMPREF9019_0913	NA	NA
UHGV-0003876_63	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0003876_63	eggNOG-mapper	679189.HMPREF9019_0912	NA	NA
UHGV-0003876_63	Pfam	PF05772	NinB protein	NinB
UHGV-0003876_63	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0003876_64	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_64	UniRef90	UniRef90_A0A3C0D6Y6	Single-stranded DNA-binding protein	NA
UHGV-0003876_64	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-0003876_64	Pfam	PF11325	NA	DUF3127
UHGV-0003876_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0003876_64	Structural annotation	PF11325, MF_00984, NF005242, COG2965	NA	NA
UHGV-0003876_65	eggNOG-mapper	343509.SG0742	NA	NA
UHGV-0003876_65	Structural annotation	PF12684, TIGR04256, COG5377	NA	NA
UHGV-0003876_66	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0003876_66	UniRef90	UniRef90_A0A6A7UPL9	AAA family ATPase	NA
UHGV-0003876_66	eggNOG-mapper	155515.JP36_07610	AAA domain	NA
UHGV-0003876_66	Pfam	PF13479	AAA domain	AAA_24
UHGV-0003876_66	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0003876_66	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA