UHGV-0004028

Genome information

Genome length 41,063 bps

CDS count 62

Completeness 98.21% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004028
vOTU ID	vOTU-062941
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_19_1739__NODE_362_length_103401_cov_19.383067_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.54
Jumbo phage	No

Genome content
Genome length	41,063 bps
GC content	34.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	88.64%
Average CDS length	591.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004028_1	PHROG	phrog_22984	NA	unknown function
UHGV-0004028_3	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0004028_4	Structural annotation	PF20787	NA	NA
UHGV-0004028_5	Structural annotation	PF10618	NA	NA
UHGV-0004028_6	PHROG	phrog_372	tail protein	tail
UHGV-0004028_6	UniRef90	UniRef90_A0A4D6AUQ2	Capsid and scaffold protein	NA
UHGV-0004028_6	eggNOG-mapper	764299.STRIC_1425	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0004028_6	Pfam	PF05895	NA	DUF859
UHGV-0004028_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0004028_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0004028_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0004028_7	UniRef90	UniRef90_UPI000CDA202F	phage tail protein	NA
UHGV-0004028_7	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0004028_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0004028_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0004028_7	COG	COG4926	Phage-related protein	NA
UHGV-0004028_7	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926, COG3506	NA	NA
UHGV-0004028_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0004028_8	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0004028_8	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0004028_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0004028_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0004028_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0004028_9	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0004028_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0004028_9	UniRef90	UniRef90_A0A174LYQ1	Phage-related minor tail protein	NA
UHGV-0004028_9	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0004028_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0004028_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0004028_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0004028_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0004028_12	PHROG	phrog_881	holin	lysis
UHGV-0004028_12	UniRef90	UniRef90_UPI0018A8FD4D	phage holin	NA
UHGV-0004028_12	eggNOG-mapper	1437603.BMON_0122	Putative phage holin Dp-1	NA
UHGV-0004028_12	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0004028_12	Structural annotation	PF16938	NA	NA
UHGV-0004028_13	PHROG	phrog_11037	NA	unknown function
UHGV-0004028_13	UniRef90	UniRef90_A0A1T4LEQ5	SH3b domain-containing protein	NA
UHGV-0004028_13	eggNOG-mapper	1232449.BAHV02000016_gene1807	NA	NA
UHGV-0004028_13	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0004028_14	PHROG	phrog_88	major tail protein	tail
UHGV-0004028_14	UniRef90	UniRef90_UPI0011DDC47F	phage tail protein	NA
UHGV-0004028_14	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0004028_14	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0004028_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0004028_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0004028_16	eggNOG-mapper	663278.Ethha_1842	NA	NA
UHGV-0004028_18	PHROG	phrog_749	NA	unknown function
UHGV-0004028_18	UniRef90	UniRef90_A0A396SIZ8	Phage gp6-like head-tail connector protein	NA
UHGV-0004028_18	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0004028_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0004028_19	UniRef90	UniRef90_A0A8H0URR8	Phage major capsid protein	NA
UHGV-0004028_19	eggNOG-mapper	864178.E2ELI5_9CAUD	peptidase activity	NA
UHGV-0004028_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0004028_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0004028_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0004028_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0004028_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0004028_20	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0004028_20	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0004028_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0004028_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0004028_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0004028_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0004028_21	UniRef90	UniRef90_A0A1G4FJP8	Phage portal protein, HK97 family	NA
UHGV-0004028_21	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0004028_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0004028_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0004028_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0004028_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0004028_22	UniRef90	UniRef90_A0A3E4M7F4	Terminase	NA
UHGV-0004028_22	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0004028_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0004028_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0004028_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0004028_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0004028_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0004028_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0004028_24	UniRef90	UniRef90_UPI00073F2BD4	NA	NA
UHGV-0004028_24	eggNOG-mapper	491915.Aflv_0659	HNH nucleases	NA
UHGV-0004028_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0004028_28	PHROG	phrog_15551	NA	unknown function
UHGV-0004028_28	UniRef90	UniRef90_A0A7X2NKG1	LPD11 domain-containing protein	NA
UHGV-0004028_28	eggNOG-mapper	879630.E1A234_9CAUD	NA	NA
UHGV-0004028_28	Pfam	PF18824	Large polyvalent protein-associated domain 11	LPD11
UHGV-0004028_28	Structural annotation	PF18824	NA	NA
UHGV-0004028_30	PHROG	phrog_25027	NA	unknown function
UHGV-0004028_30	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0004028_30	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0004028_32	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0004028_34	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0004028_34	UniRef90	UniRef90_A0A1V5KAU2	DarA_C domain-containing protein	NA
UHGV-0004028_34	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0004028_34	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0004028_36	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-0004028_36	Structural annotation	PF18358, NF037951	NA	NA
UHGV-0004028_40	Structural annotation	TIGR01636	NA	NA
UHGV-0004028_41	PHROG	phrog_236	nucleotide kinase	other
UHGV-0004028_41	UniRef90	UniRef90_A0A1C5MWI7	NA	NA
UHGV-0004028_41	eggNOG-mapper	411460.RUMTOR_02028	NA	NA
UHGV-0004028_41	Pfam	PF11753	NA	DUF3310
UHGV-0004028_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0004028_42	PHROG	phrog_216	integrase	integration and excision
UHGV-0004028_42	UniRef90	UniRef90_A0A412PAR7	Tyr recombinase domain-containing protein	NA
UHGV-0004028_42	eggNOG-mapper	706433.HMPREF9430_01277	DNA integration	NA
UHGV-0004028_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0004028_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0004028_42	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0004028_44	PHROG	phrog_3878	NA	unknown function
UHGV-0004028_47	PHROG	phrog_10714	NA	unknown function
UHGV-0004028_47	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0004028_49	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0004028_49	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0004028_49	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0004028_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0004028_56	UniRef90	UniRef90_UPI0004A0D626	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0004028_56	eggNOG-mapper	33876.JNXY01000004_gene1782	sulfate reduction	NA
UHGV-0004028_56	PADLOC	SspD_00001	SspD	SSP
UHGV-0004028_56	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0004028_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0004028_56	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0004028_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0004028_58	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0004028_58	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0004028_58	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0004028_58	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0004028_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0004028_58	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0004028_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0004028_59	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0004028_59	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0004028_59	UniRef90	UniRef90_UPI001A9C69F1	dUTP diphosphatase	NA
UHGV-0004028_59	eggNOG-mapper	386043.lwe1709	dUTPase	NA
UHGV-0004028_59	Pfam	PF00692	dUTPase	dUTPase
UHGV-0004028_59	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0004028_59	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0004028_60	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0004028_60	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0004028_60	UniRef90	UniRef90_A0A1Y4LYP2	Methyltransferase	NA
UHGV-0004028_60	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0004028_60	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0004028_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0004028_60	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0004028_61	PHROG	phrog_9804	NA	unknown function
UHGV-0004028_61	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0004028_61	Structural annotation	PF11417	NA	NA
UHGV-0004028_62	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0004028_62	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0004028_62	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0004028_62	Structural annotation	PF01475, NF006999, COG0735	NA	NA