UHGV-0004104

Genome information

Genome length 33,342 bps

CDS count 50

Completeness 84.64% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004104
vOTU ID	vOTU-034943
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_G_6_1094__NODE_76_length_224360_cov_26.970560_1
BioSample	SAMEA4765554
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.76
Jumbo phage	No

Genome content
Genome length	33,342 bps
GC content	29.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.03%
Average CDS length	624.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004104_1	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0004104_1	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0004104_2	PHROG	phrog_7566	NA	unknown function
UHGV-0004104_2	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0004104_5	PHROG	phrog_19415	NA	unknown function
UHGV-0004104_5	UniRef90	UniRef90_UPI001E36D421	NA	NA
UHGV-0004104_5	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0004104_5	Pfam	PF19808	NA	DUF6291
UHGV-0004104_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0004104_5	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0004104_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0004104_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0004104_6	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0004104_6	eggNOG-mapper	398512.JQKC01000002_gene1875	Participates in initiation and elongation during chromosome replication	NA
UHGV-0004104_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0004104_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0004104_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0004104_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0004104_8	PHROG	phrog_4973	NA	unknown function
UHGV-0004104_8	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0004104_8	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0004104_8	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-0004104_9	KOfam	K06940	NA	NA
UHGV-0004104_9	PHROG	phrog_32498	NA	unknown function
UHGV-0004104_9	UniRef90	UniRef90_A0A173RH00	Flagellin N-methylase	NA
UHGV-0004104_9	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0004104_9	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0004104_10	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0004104_10	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0004104_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0004104_12	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0004104_13	PHROG	phrog_625	NA	unknown function
UHGV-0004104_13	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0004104_13	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0004104_13	Structural annotation	PF12961	NA	NA
UHGV-0004104_14	Structural annotation	PF20763	NA	NA
UHGV-0004104_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0004104_23	PHROG	phrog_2329	NA	unknown function
UHGV-0004104_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0004104_25	UniRef90	UniRef90_R7FFL5	Prophage L54a HNH endonuclease family protein	NA
UHGV-0004104_25	eggNOG-mapper	935948.KE386495_gene1338	HNH nucleases	NA
UHGV-0004104_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0004104_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0004104_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0004104_27	UniRef90	UniRef90_A0A3B9JFI2	RNA polymerase subunit sigma-70	NA
UHGV-0004104_27	eggNOG-mapper	1423775.BAMN01000009_gene400	NA	NA
UHGV-0004104_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0004104_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0004104_28	UniRef90	UniRef90_UPI0013578A69	terminase large subunit	NA
UHGV-0004104_28	eggNOG-mapper	926561.KB900623_gene766	Phage terminase-like protein large subunit	NA
UHGV-0004104_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0004104_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0004104_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0004104_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0004104_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0004104_29	UniRef90	UniRef90_R7FFK9	HK97 family phage portal protein	NA
UHGV-0004104_29	eggNOG-mapper	1265845.PWEIH_00620	Phage portal protein	NA
UHGV-0004104_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0004104_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0004104_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0004104_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0004104_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0004104_30	UniRef90	UniRef90_UPI000852BDF2	Clp protease ClpP	NA
UHGV-0004104_30	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0004104_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0004104_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0004104_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0004104_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0004104_31	UniRef90	UniRef90_R7IDK9	Phage capsid family	NA
UHGV-0004104_31	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0004104_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0004104_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0004104_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0004104_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0004104_32	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0004104_32	UniRef90	UniRef90_UPI000E6791D9	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0004104_32	eggNOG-mapper	1405498.SSIM_04855	Rho termination factor, N-terminal domain	NA
UHGV-0004104_33	PHROG	phrog_749	NA	unknown function
UHGV-0004104_34	UniRef90	UniRef90_A0A7C6J040	Phage head closure protein	NA
UHGV-0004104_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0004104_35	Structural annotation	PF05657	NA	NA
UHGV-0004104_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0004104_36	UniRef90	UniRef90_R7FK52	Phage protein HK97 gp10 family	NA
UHGV-0004104_36	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0004104_37	PHROG	phrog_88	major tail protein	tail
UHGV-0004104_37	UniRef90	UniRef90_R5M2L7	Phi13 family phage major tail protein	NA
UHGV-0004104_37	eggNOG-mapper	1302286.BAOT01000067_gene2178	NA	NA
UHGV-0004104_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0004104_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0004104_38	Structural annotation	PF11836	NA	NA
UHGV-0004104_39	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0004104_41	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0004104_41	UniRef90	UniRef90_R7FHV4	Phage tail tape measure protein family	NA
UHGV-0004104_41	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0004104_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0004104_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0004104_41	COG	COG1340	NA	NA
UHGV-0004104_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0004104_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0004104_43	UniRef90	UniRef90_UPI00189CFC07	phage tail family protein	NA
UHGV-0004104_43	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0004104_43	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0004104_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0004104_44	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0004104_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0004104_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0004104_45	PHROG	phrog_372	tail protein	tail
UHGV-0004104_45	UniRef90	UniRef90_A0A8F2F0P6	NA	NA
UHGV-0004104_45	eggNOG-mapper	1035189.HMPREF9954_0321	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0004104_45	Pfam	PF05895	NA	DUF859
UHGV-0004104_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0004104_45	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0004104_47	Structural annotation	PF16938	NA	NA
UHGV-0004104_48	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0004104_48	PHROG	phrog_1493	endolysin	lysis
UHGV-0004104_48	UniRef90	UniRef90_A0A3D1RJG1	Peptidoglycan-binding domain-containing protein	NA
UHGV-0004104_48	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0004104_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0004104_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0004104_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0004104_48	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0004104_50	UniRef90	UniRef90_R7P7N4	Endoribonuclease EndoA	NA
UHGV-0004104_50	Structural annotation	PF02452, NF010262, COG2337	NA	NA