UHGV-0004126

Genome information

Genome length 54,053 bps

CDS count 71

Completeness 93.00% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004126
vOTU ID	vOTU-081133
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_D_4_2182__NODE_1357_length_66129_cov_36.993051_1
BioSample	SAMEA4766184
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.7
Jumbo phage	No

Genome content
Genome length	54,053 bps
GC content	44.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.63%
Average CDS length	708.51 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004126_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0004126_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0004126_1	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0004126_1	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0004126_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0004126_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0004126_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0004126_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0004126_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0004126_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0004126_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0004126_5	UniRef90	UniRef90_A0A1Q6R550	HTH cro/C1-type domain-containing protein	NA
UHGV-0004126_5	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0004126_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004126_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0004126_5	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0004126_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0004126_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0004126_6	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0004126_6	eggNOG-mapper	246199.CUS_7322	Helix-turn-helix	NA
UHGV-0004126_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004126_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0004126_10	PHROG	phrog_14367	NA	unknown function
UHGV-0004126_10	UniRef90	UniRef90_A0A3N5LBU6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0004126_10	eggNOG-mapper	1121934.AUDX01000014_gene1571	Lysin motif	NA
UHGV-0004126_10	Pfam	PF01476	LysM domain	LysM
UHGV-0004126_10	COG	COG1388	LysM repeat	NA
UHGV-0004126_10	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0004126_13	PHROG	phrog_1366	NA	unknown function
UHGV-0004126_13	UniRef90	UniRef90_UPI001EDFC883	ATP-binding protein	NA
UHGV-0004126_13	eggNOG-mapper	555779.Dthio_PD3616	SMART AAA ATPase	NA
UHGV-0004126_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0004126_13	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0004126_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0004126_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0004126_14	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0004126_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0004126_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0004126_15	UniRef90	UniRef90_UPI0011DDD220	helix-turn-helix domain-containing protein	NA
UHGV-0004126_15	eggNOG-mapper	1232453.BAIF02000016_gene3127	NA	NA
UHGV-0004126_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0004126_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0004126_15	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0004126_16	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0004126_16	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0004126_16	Structural annotation	PF11417	NA	NA
UHGV-0004126_17	PHROG	phrog_12728	NA	unknown function
UHGV-0004126_17	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0004126_22	PHROG	phrog_10714	NA	unknown function
UHGV-0004126_22	Structural annotation	PF21173	NA	NA
UHGV-0004126_23	PHROG	phrog_3878	NA	unknown function
UHGV-0004126_23	Structural annotation	PF19607	NA	NA
UHGV-0004126_26	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0004126_26	UniRef90	UniRef90_A0A226QS88	SAM-dependent methyltransferase	NA
UHGV-0004126_26	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-0004126_26	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0004126_26	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0004126_26	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0004126_31	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0004126_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0004126_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004126_33	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0004126_33	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0004126_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0004126_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0004126_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0004126_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0004126_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0004126_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0004126_34	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0004126_34	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0004126_34	Pfam	PF06356	NA	DUF1064
UHGV-0004126_34	Structural annotation	PF06356	NA	NA
UHGV-0004126_35	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0004126_35	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0004126_37	PHROG	phrog_2329	NA	unknown function
UHGV-0004126_37	UniRef90	UniRef90_UPI001A21AB60	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0004126_37	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-0004126_37	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0004126_39	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0004126_40	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0004126_40	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0004126_40	UniRef90	UniRef90_UPI000833FD0A	terminase small subunit	NA
UHGV-0004126_40	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0004126_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0004126_40	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0004126_40	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0004126_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004126_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0004126_41	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0004126_41	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0004126_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0004126_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0004126_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0004126_41	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0004126_42	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0004126_42	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0004126_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0004126_43	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0004126_43	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0004126_43	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0004126_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0004126_46	PHROG	phrog_334	major head protein	head and packaging
UHGV-0004126_46	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0004126_46	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0004126_46	Pfam	PF13252	NA	DUF4043
UHGV-0004126_46	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0004126_46	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0004126_47	Pfam	PF20387	NA	DUF6682
UHGV-0004126_47	Structural annotation	PF20387	NA	NA
UHGV-0004126_48	PHROG	phrog_26466	NA	unknown function
UHGV-0004126_48	UniRef90	UniRef90_G9YK55	Fibronectin type III domain protein	NA
UHGV-0004126_48	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0004126_48	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0004126_48	COG	COG1511	NA	NA
UHGV-0004126_49	PHROG	phrog_2427	NA	unknown function
UHGV-0004126_50	PHROG	phrog_6061	NA	unknown function
UHGV-0004126_51	PHROG	phrog_5302	tail protein	tail
UHGV-0004126_51	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0004126_52	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0004126_52	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0004126_52	UniRef90	UniRef90_A0A0J6WUF3	Reverse transcriptase domain-containing protein	NA
UHGV-0004126_52	eggNOG-mapper	1121100.JCM6294_1117	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0004126_52	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0004126_52	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0004126_52	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0004126_52	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0004126_53	eggNOG-mapper	443152.MDG893_20534	NA	NA
UHGV-0004126_54	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0004126_54	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0004126_55	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0004126_56	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0004126_56	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0004126_58	PHROG	phrog_10691	NA	unknown function
UHGV-0004126_58	UniRef90	UniRef90_A0A316S9L9	Helicase ATP-binding domain-containing protein	NA
UHGV-0004126_58	eggNOG-mapper	1485543.JMME01000020_gene773	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-0004126_58	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0004126_58	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0004126_58	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0004126_58	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0004126_58	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0004126_58	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0004126_61	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0004126_61	Structural annotation	PF21277	NA	NA
UHGV-0004126_62	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0004126_62	UniRef90	UniRef90_A0A8J6M6I8	NA	NA
UHGV-0004126_62	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0004126_62	Pfam	PF14359	NA	DUF4406
UHGV-0004126_62	Structural annotation	PF14359	NA	NA
UHGV-0004126_66	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0004126_66	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0004126_66	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0004126_67	PHROG	phrog_21718	NA	unknown function
UHGV-0004126_68	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0004126_69	PHROG	phrog_16490	NA	unknown function
UHGV-0004126_69	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0004126_70	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0004126_71	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0004126_71	eggNOG-mapper	1378168.N510_03079	NA	NA