UHGV-0004152

Genome information

Genome length 33,182 bps

CDS count 42

Completeness 84.20% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004152
vOTU ID	vOTU-035030
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_24_1920__NODE_1094_length_76928_cov_24.089537_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.95
Jumbo phage	No

Genome content
Genome length	33,182 bps
GC content	42.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.21%
Average CDS length	723.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004152_1	PHROG	phrog_27136	NA	unknown function
UHGV-0004152_1	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-0004152_1	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0004152_2	PHROG	phrog_87	metallo-protease	other
UHGV-0004152_2	UniRef90	UniRef90_A0A414EG59	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0004152_2	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0004152_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0004152_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0004152_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0004152_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0004152_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0004152_3	UniRef90	UniRef90_UPI001D0969DE	helix-turn-helix domain-containing protein	NA
UHGV-0004152_3	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0004152_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0004152_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004152_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0004152_4	UniRef90	UniRef90_UPI001D072BB4	helix-turn-helix domain-containing protein	NA
UHGV-0004152_4	eggNOG-mapper	743719.PaelaDRAFT_5623	Helix-turn-helix XRE-family like proteins	NA
UHGV-0004152_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004152_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0004152_8	eggNOG-mapper	1121115.AXVN01000006_gene2172	NA	NA
UHGV-0004152_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0004152_10	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0004152_10	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0004152_10	Structural annotation	PF01446	NA	NA
UHGV-0004152_11	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0004152_11	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0004152_11	UniRef90	UniRef90_A0A416Q1Q2	RNase H type-1 domain-containing protein	NA
UHGV-0004152_11	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0004152_11	Pfam	PF00075	RNase H	RNase_H
UHGV-0004152_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0004152_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0004152_12	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0004152_13	PHROG	phrog_4433	NA	unknown function
UHGV-0004152_13	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0004152_13	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0004152_13	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0004152_14	PHROG	phrog_8470	NA	unknown function
UHGV-0004152_14	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0004152_14	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0004152_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0004152_14	Structural annotation	PF14284	NA	NA
UHGV-0004152_15	PHROG	phrog_15077	NA	unknown function
UHGV-0004152_15	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0004152_15	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0004152_16	PHROG	phrog_7566	NA	unknown function
UHGV-0004152_16	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0004152_18	PHROG	phrog_6568	NA	unknown function
UHGV-0004152_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0004152_19	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0004152_19	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0004152_19	Structural annotation	PF02996	NA	NA
UHGV-0004152_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0004152_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0004152_20	UniRef90	UniRef90_A0A6L8XU44	Terminase small subunit	NA
UHGV-0004152_20	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0004152_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0004152_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0004152_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0004152_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004152_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0004152_21	UniRef90	UniRef90_A0A416Q1Q9	Terminase	NA
UHGV-0004152_21	eggNOG-mapper	1298920.KI911353_gene4856	Phage terminase, large subunit, PBSX family	NA
UHGV-0004152_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0004152_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0004152_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0004152_22	UniRef90	UniRef90_A0A416Q1Z2	Phage portal protein	NA
UHGV-0004152_22	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-0004152_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0004152_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0004152_23	PHROG	phrog_25639	NA	unknown function
UHGV-0004152_23	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0004152_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0004152_24	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0004152_24	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0004152_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0004152_24	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0004152_24	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0004152_24	Structural annotation	PF06152	NA	NA
UHGV-0004152_26	PHROG	phrog_3675	NA	unknown function
UHGV-0004152_26	UniRef90	UniRef90_A0A416Q246	Dihydrolipoyl dehydrogenase	NA
UHGV-0004152_26	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0004152_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0004152_26	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0004152_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0004152_27	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0004152_27	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0004152_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0004152_29	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-0004152_29	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-0004152_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0004152_29	Structural annotation	PF06810	NA	NA
UHGV-0004152_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-0004152_30	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-0004152_30	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0004152_30	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0004152_31	PHROG	phrog_15682	NA	unknown function
UHGV-0004152_31	eggNOG-mapper	1395587.P364_0122060	NA	NA
UHGV-0004152_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0004152_32	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0004152_33	PHROG	phrog_8710	NA	unknown function
UHGV-0004152_33	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0004152_33	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0004152_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0004152_34	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0004152_35	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0004152_35	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0004152_35	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0004152_35	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0004152_35	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0004152_36	PHROG	phrog_820	major tail protein	tail
UHGV-0004152_36	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0004152_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0004152_37	PHROG	phrog_8300	NA	unknown function
UHGV-0004152_37	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0004152_37	Structural annotation	PF06854	NA	NA
UHGV-0004152_38	PHROG	phrog_8355	NA	unknown function
UHGV-0004152_38	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0004152_38	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0004152_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0004152_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0004152_39	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0004152_39	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0004152_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0004152_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0004152_40	PHROG	phrog_1194	NA	unknown function
UHGV-0004152_40	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0004152_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0004152_41	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0004152_41	PHROG	phrog_6616	tail protein	tail
UHGV-0004152_41	UniRef90	UniRef90_A0A1C5RGI0	Peptidase S74 domain-containing protein	NA
UHGV-0004152_41	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-0004152_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0004152_41	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0004152_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0004152_41	COG	COG4733	Phage-related protein, tail protein J	NA