UHGV-0004222

Genome information

Genome length 36,300 bps

CDS count 63

Completeness 91.91% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004222
vOTU ID	vOTU-076849
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_A_10_1818__NODE_124_length_106520_cov_8.881354_1
BioSample	SAMEA4766055
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.7
Jumbo phage	No

Genome content
Genome length	36,300 bps
GC content	36.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.73%
Average CDS length	546.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004222_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0004222_4	PHROG	phrog_16490	NA	unknown function
UHGV-0004222_4	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0004222_6	PHROG	phrog_21718	NA	unknown function
UHGV-0004222_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0004222_7	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0004222_7	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0004222_10	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0004222_10	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0004222_10	UniRef90	UniRef90_A0A395VDP3	Reverse transcriptase domain-containing protein	NA
UHGV-0004222_10	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0004222_10	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0004222_10	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0004222_10	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0004222_11	eggNOG-mapper	397291.C804_00978	NA	NA
UHGV-0004222_11	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0004222_12	PHROG	phrog_19280	NA	unknown function
UHGV-0004222_12	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0004222_12	Pfam	PF19789	NA	DUF6273
UHGV-0004222_13	PHROG	phrog_372	tail protein	tail
UHGV-0004222_13	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0004222_13	eggNOG-mapper	764299.STRIC_1425	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0004222_13	Pfam	PF05895	NA	DUF859
UHGV-0004222_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0004222_13	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0004222_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0004222_14	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-0004222_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0004222_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0004222_14	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0004222_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0004222_14	COG	COG4926	Phage-related protein	NA
UHGV-0004222_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0004222_15	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0004222_15	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0004222_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0004222_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0004222_16	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0004222_16	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-0004222_16	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0004222_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0004222_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0004222_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0004222_16	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0004222_18	PHROG	phrog_443	holin	lysis
UHGV-0004222_18	UniRef90	UniRef90_UPI00129D6A49	holin	NA
UHGV-0004222_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0004222_19	PHROG	phrog_8781	endolysin	lysis
UHGV-0004222_19	UniRef90	UniRef90_A0A350H3V1	Peptidase C51 domain-containing protein	NA
UHGV-0004222_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0004222_19	Structural annotation	PF05382, NF033742, COG3942	NA	NA
UHGV-0004222_22	PHROG	phrog_885	major tail protein	tail
UHGV-0004222_22	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0004222_22	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0004222_22	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0004222_23	Structural annotation	PF11367	NA	NA
UHGV-0004222_24	PHROG	phrog_17977	NA	unknown function
UHGV-0004222_24	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0004222_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0004222_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0004222_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0004222_26	UniRef90	UniRef90_A0A0D0SBF1	Phage major capsid protein	NA
UHGV-0004222_26	eggNOG-mapper	1256908.HMPREF0373_00476	NA	NA
UHGV-0004222_26	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0004222_26	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0004222_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0004222_27	Structural annotation	PF06810	NA	NA
UHGV-0004222_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0004222_28	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0004222_28	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0004222_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0004222_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0004222_28	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0004222_30	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0004222_30	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0004222_30	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-0004222_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0004222_30	COG	COG2369	NA	NA
UHGV-0004222_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0004222_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0004222_31	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0004222_31	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0004222_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0004222_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0004222_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004222_32	PHROG	phrog_10250	NA	unknown function
UHGV-0004222_32	UniRef90	UniRef90_A0A2N2CXF0	PBSX family phage terminase large subunit	NA
UHGV-0004222_32	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-0004222_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0004222_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0004222_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0004222_36	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0004222_36	Structural annotation	PF02001, TIGR01636	NA	NA
UHGV-0004222_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0004222_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0004222_43	UniRef90	UniRef90_A0A3R6DF97	Cytosine-specific methyltransferase	NA
UHGV-0004222_43	eggNOG-mapper	1499683.CCFF01000005_gene54	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0004222_43	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0004222_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0004222_43	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0004222_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0004222_43	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0004222_44	PHROG	phrog_9804	NA	unknown function
UHGV-0004222_44	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0004222_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0004222_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0004222_45	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0004222_45	UniRef90	UniRef90_A0A098AW53	Phage replication protein	NA
UHGV-0004222_45	eggNOG-mapper	1238184.CM001792_gene2546	dnaD_dom DnaD domain protein	NA
UHGV-0004222_45	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0004222_45	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0004222_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0004222_45	Structural annotation	PF09524, PF04492, TIGR02220, TIGR01714	NA	NA
UHGV-0004222_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0004222_46	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0004222_46	UniRef90	UniRef90_A0A1V4VEN0	Endodeoxyribonuclease RusA	NA
UHGV-0004222_46	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0004222_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0004222_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0004222_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0004222_47	PHROG	phrog_1389	NA	unknown function
UHGV-0004222_47	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0004222_47	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0004222_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0004222_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004222_48	UniRef90	UniRef90_UPI00177D1FCE	single-stranded DNA-binding protein	NA
UHGV-0004222_48	eggNOG-mapper	1545701.LACWKB10_1167	Single-strand binding protein family	NA
UHGV-0004222_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0004222_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0004222_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0004222_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0004222_48	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0004222_50	PHROG	phrog_6244	NA	unknown function
UHGV-0004222_50	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0004222_50	Structural annotation	PF05565	NA	NA
UHGV-0004222_51	PHROG	phrog_14970	NA	unknown function
UHGV-0004222_51	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0004222_51	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0004222_51	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0004222_51	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0004222_54	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0004222_54	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0004222_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0004222_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0004222_55	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0004222_55	eggNOG-mapper	1203606.HMPREF1526_00249	sequence-specific DNA binding	NA
UHGV-0004222_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004222_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0004222_57	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0004222_63	PHROG	phrog_3754	NA	unknown function
UHGV-0004222_63	eggNOG-mapper	1278311.AUAL01000001_gene36	NA	NA