UHGV-0004286

Genome information

Genome length 33,836 bps

CDS count 52

Completeness 98.64% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004286
vOTU ID	vOTU-007705
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_P_7_2143__NODE_735_length_96808_cov_88.663396_1
BioSample	SAMEA4766166
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.39
Jumbo phage	No

Genome content
Genome length	33,836 bps
GC content	46.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.48%
Average CDS length	620.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004286_1	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0004286_1	eggNOG-mapper	1125725.HMPREF1325_1344	cellulase activity	NA
UHGV-0004286_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0004286_1	Structural annotation	PF13550, PF03658, PF14879, MF_00460, NF040662, NF005028, COG4733, COG2914	NA	NA
UHGV-0004286_2	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0004286_2	PHROG	phrog_329	minor tail protein	tail
UHGV-0004286_2	UniRef90	UniRef90_M2BSV4	NlpC/P60 domain-containing protein	NA
UHGV-0004286_2	eggNOG-mapper	1125725.HMPREF1325_1343	NlpC/P60 family	NA
UHGV-0004286_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0004286_3	eggNOG-mapper	1125725.HMPREF1325_1342	NA	NA
UHGV-0004286_3	Structural annotation	PF08875, MF_00833, TIGR01600, COG4672	NA	NA
UHGV-0004286_4	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0004286_5	PHROG	phrog_24676	tail length tape measure protein	tail
UHGV-0004286_5	UniRef90	UniRef90_A0A7W8GBU4	Chromosome segregation ATPase	NA
UHGV-0004286_5	eggNOG-mapper	1125725.HMPREF1325_1340	nuclear chromosome segregation	NA
UHGV-0004286_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0004286_5	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0004286_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0004286_6	UniRef90	UniRef90_UPI00164CE92E	minor capsid protein	NA
UHGV-0004286_6	eggNOG-mapper	1539298.JO41_08160	Minor capsid protein	NA
UHGV-0004286_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0004286_7	PHROG	phrog_6473	NA	unknown function
UHGV-0004286_7	eggNOG-mapper	864570.HMPREF9189_1691	NA	NA
UHGV-0004286_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0004286_8	UniRef90	UniRef90_UPI0011C910CB	minor capsid protein	NA
UHGV-0004286_8	eggNOG-mapper	1539298.JO41_12785	Phage minor capsid protein 2	NA
UHGV-0004286_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0004286_8	COG	COG2369	NA	NA
UHGV-0004286_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0004286_9	UniRef90	UniRef90_M2C3A6	A118 family phage portal protein, putative	NA
UHGV-0004286_9	eggNOG-mapper	1125725.HMPREF1325_1322	phage minor capsid protein	NA
UHGV-0004286_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0004286_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004286_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0004286_10	UniRef90	UniRef90_M2BSU5	PBSX family phage terminase, large subunit	NA
UHGV-0004286_10	eggNOG-mapper	1125725.HMPREF1325_1321	PBSX family phage terminase, large subunit	NA
UHGV-0004286_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0004286_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0004286_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0004286_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0004286_11	UniRef90	UniRef90_A0A660U9D6	HTH_8 domain-containing protein	NA
UHGV-0004286_11	eggNOG-mapper	743525.TSC_c10130	NA	NA
UHGV-0004286_12	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0004286_12	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0004286_12	UniRef90	UniRef90_U1FPG3	DNA methylase family protein	NA
UHGV-0004286_12	eggNOG-mapper	1125725.HMPREF1325_1319	N-4 methylation of cytosine	NA
UHGV-0004286_12	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0004286_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0004286_12	COG	COG0863	DNA modification methylase	NA
UHGV-0004286_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0004286_13	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0004286_13	UniRef90	UniRef90_UPI0016528F94	ParB N-terminal domain-containing protein	NA
UHGV-0004286_13	eggNOG-mapper	1125725.HMPREF1325_1319	N-4 methylation of cytosine	NA
UHGV-0004286_13	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0004286_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0004286_13	COG	COG0863	DNA modification methylase	NA
UHGV-0004286_13	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0004286_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0004286_17	PHROG	phrog_9611	endolysin	lysis
UHGV-0004286_17	UniRef90	UniRef90_UPI0011CC127E	peptidoglycan recognition protein family protein	NA
UHGV-0004286_17	eggNOG-mapper	1125725.HMPREF1325_1326	Ami_2	NA
UHGV-0004286_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0004286_17	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0004286_17	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0004286_19	PHROG	phrog_17180	NA	unknown function
UHGV-0004286_19	eggNOG-mapper	1200557.JHWV01000006_gene1699	NA	NA
UHGV-0004286_20	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0004286_20	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0004286_20	UniRef90	UniRef90_A0A7W8GBR7	Reverse transcriptase domain-containing protein	NA
UHGV-0004286_20	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0004286_20	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0004286_20	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0004286_20	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0004286_20	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0004286_21	eggNOG-mapper	97139.C824_00240	NA	NA
UHGV-0004286_21	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0004286_22	UniRef90	UniRef90_A0A6S6XJ17	FHA domain-containing protein	NA
UHGV-0004286_22	eggNOG-mapper	97139.C824_00239	NA	NA
UHGV-0004286_22	Structural annotation	PF19789	NA	NA
UHGV-0004286_24	PHROG	phrog_706	NA	unknown function
UHGV-0004286_24	UniRef90	UniRef90_UPI0011C87A99	Gp15 family bacteriophage protein	NA
UHGV-0004286_24	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0004286_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0004286_24	Structural annotation	PF06854	NA	NA
UHGV-0004286_25	PHROG	phrog_3099	NA	unknown function
UHGV-0004286_25	eggNOG-mapper	1539298.JO41_08150	NA	NA
UHGV-0004286_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0004286_26	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0004286_26	UniRef90	UniRef90_UPI0011C89F23	minor capsid protein	NA
UHGV-0004286_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0004286_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0004286_27	UniRef90	UniRef90_UPI00164CE92E	minor capsid protein	NA
UHGV-0004286_27	eggNOG-mapper	1539298.JO41_08160	Minor capsid protein	NA
UHGV-0004286_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0004286_27	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0004286_28	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0004286_28	UniRef90	UniRef90_UPI0011C7F08F	putative minor capsid protein	NA
UHGV-0004286_28	eggNOG-mapper	1539298.JO41_08165	Minor capsid protein	NA
UHGV-0004286_28	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0004286_28	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0004286_28	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0004286_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0004286_29	eggNOG-mapper	1125725.HMPREF1325_1333	NA	NA
UHGV-0004286_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0004286_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0004286_31	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0004286_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0004286_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0004286_32	UniRef90	UniRef90_UPI0011CB1FAC	phage scaffolding protein	NA
UHGV-0004286_32	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0004286_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0004286_32	Structural annotation	PF06810	NA	NA
UHGV-0004286_34	PHROG	phrog_625	NA	unknown function
UHGV-0004286_34	UniRef90	UniRef90_A0A7C3D333	ASCH domain-containing protein	NA
UHGV-0004286_34	Structural annotation	PF12961, MF_00684, COG4043	NA	NA
UHGV-0004286_38	eggNOG-mapper	1125725.HMPREF1325_1317	NA	NA
UHGV-0004286_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0004286_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0004286_39	UniRef90	UniRef90_M2BFI9	AAA domain-containing protein	NA
UHGV-0004286_39	eggNOG-mapper	742823.HMPREF9465_00184	IstB-like ATP binding protein	NA
UHGV-0004286_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0004286_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0004286_40	PHROG	phrog_15768	NA	unknown function
UHGV-0004286_40	UniRef90	UniRef90_UPI0011C9EB7D	NA	NA
UHGV-0004286_40	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0004286_40	Pfam	PF19808	NA	DUF6291
UHGV-0004286_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0004286_40	Structural annotation	PF19808	NA	NA
UHGV-0004286_41	eggNOG-mapper	1125725.HMPREF1325_1313	NA	NA
UHGV-0004286_43	UniRef90	UniRef90_A0A7W8LNA3	NA	NA
UHGV-0004286_43	Pfam	PF19789	NA	DUF6273
UHGV-0004286_43	Structural annotation	PF19789	NA	NA
UHGV-0004286_44	eggNOG-mapper	1539298.JO41_08365	NA	NA
UHGV-0004286_44	Structural annotation	PF16784	NA	NA
UHGV-0004286_45	PHROG	phrog_7792	NA	unknown function
UHGV-0004286_45	eggNOG-mapper	1121033.AUCF01000004_gene5049	protein involved in exopolysaccharide biosynthesis	NA
UHGV-0004286_45	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0004286_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0004286_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004286_46	UniRef90	UniRef90_M2AXR1	Single-stranded DNA-binding protein	NA
UHGV-0004286_46	eggNOG-mapper	1410609.JHVB01000001_gene1980	Single-stranded DNA-binding protein	NA
UHGV-0004286_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0004286_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0004286_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0004286_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0004286_46	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0004286_47	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0004286_47	UniRef90	UniRef90_UPI0011CB479F	NA	NA
UHGV-0004286_47	eggNOG-mapper	545694.TREPR_0892	NA	NA
UHGV-0004286_47	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0004286_50	UniRef90	UniRef90_UPI0011CAEDCA	VRR-NUC domain-containing protein	NA
UHGV-0004286_50	eggNOG-mapper	1125725.HMPREF1325_1302	NA	NA
UHGV-0004286_50	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA