UHGV-0004658

Genome information

Genome length 32,434 bps

CDS count 45

Completeness 91.78% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004658
vOTU ID	vOTU-075583
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_E_1_1719__NODE_504_length_98555_cov_7.300524_1
BioSample	SAMEA4765999
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.35
Jumbo phage	No

Genome content
Genome length	32,434 bps
GC content	42.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.08%
Average CDS length	652.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004658_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0004658_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0004658_1	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0004658_1	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0004658_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004658_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0004658_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0004658_3	Structural annotation	COG1321	NA	NA
UHGV-0004658_5	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0004658_6	PHROG	phrog_6058	NA	unknown function
UHGV-0004658_6	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0004658_6	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0004658_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0004658_9	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0004658_9	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0004658_10	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0004658_10	COG	COG0328	Ribonuclease HI	NA
UHGV-0004658_11	UniRef90	UniRef90_A0A174L2W3	Ribonuclease H	NA
UHGV-0004658_11	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0004658_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0004658_12	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0004658_13	PHROG	phrog_8470	NA	unknown function
UHGV-0004658_13	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0004658_13	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0004658_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0004658_13	Structural annotation	PF14284	NA	NA
UHGV-0004658_14	PHROG	phrog_15077	NA	unknown function
UHGV-0004658_14	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0004658_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0004658_15	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0004658_16	PHROG	phrog_7566	NA	unknown function
UHGV-0004658_16	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0004658_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0004658_21	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0004658_21	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0004658_21	Pfam	PF07374	NA	DUF1492
UHGV-0004658_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0004658_21	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0004658_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0004658_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0004658_22	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0004658_22	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0004658_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0004658_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0004658_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0004658_23	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0004658_23	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0004658_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0004658_23	COG	COG5484	NA	NA
UHGV-0004658_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0004658_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0004658_24	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0004658_24	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0004658_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0004658_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0004658_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0004658_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0004658_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0004658_25	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0004658_25	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0004658_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0004658_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0004658_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0004658_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0004658_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0004658_26	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0004658_26	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0004658_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0004658_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0004658_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0004658_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0004658_27	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0004658_27	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0004658_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0004658_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0004658_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0004658_27	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0004658_28	PHROG	phrog_749	NA	unknown function
UHGV-0004658_29	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0004658_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0004658_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0004658_30	Structural annotation	PF05657	NA	NA
UHGV-0004658_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0004658_31	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0004658_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0004658_31	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0004658_32	PHROG	phrog_88	major tail protein	tail
UHGV-0004658_32	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0004658_32	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0004658_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0004658_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0004658_35	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0004658_35	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0004658_35	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0004658_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0004658_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0004658_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0004658_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0004658_36	UniRef90	UniRef90_D4M599	Phage putative tail component, N-terminal domain	NA
UHGV-0004658_36	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0004658_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0004658_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0004658_37	PHROG	phrog_13289	tail protein	tail
UHGV-0004658_37	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0004658_37	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0004658_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0004658_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0004658_37	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0004658_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0004658_38	PHROG	phrog_14030	NA	unknown function
UHGV-0004658_38	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0004658_38	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0004658_38	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0004658_38	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0004658_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0004658_38	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0004658_39	PHROG	phrog_11541	NA	unknown function
UHGV-0004658_39	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0004658_40	Pfam	PF21732	NA	DUF6864
UHGV-0004658_40	Structural annotation	PF21732	NA	NA
UHGV-0004658_42	PHROG	phrog_4105	NA	unknown function
UHGV-0004658_42	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0004658_43	PHROG	phrog_18218	NA	unknown function
UHGV-0004658_43	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0004658_43	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0004658_43	Structural annotation	PF06946	NA	NA
UHGV-0004658_44	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0004658_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0004658_45	PHROG	phrog_291	endolysin	lysis
UHGV-0004658_45	UniRef90	UniRef90_A0A564SYY2	Glycosyl hydrolases family 25	NA
UHGV-0004658_45	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0004658_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0004658_45	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0004658_45	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA