UHGV-0004835

Genome information

Genome length 35,228 bps

CDS count 48

Completeness 90.52% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004835
vOTU ID	vOTU-065587
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_M_13_2496__NODE_1432_length_42013_cov_7.051746_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.82
Jumbo phage	No

Genome content
Genome length	35,228 bps
GC content	43.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.99%
Average CDS length	685.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004835_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0004835_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0004835_1	UniRef90	UniRef90_A0A1C5RN37	Recombinase	NA
UHGV-0004835_1	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0004835_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0004835_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0004835_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0004835_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0004835_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0004835_2	PHROG	phrog_2695	NA	unknown function
UHGV-0004835_2	UniRef90	UniRef90_R5JYN8	SIR2_2 domain-containing protein	NA
UHGV-0004835_2	eggNOG-mapper	1408287.AXUR01000026_gene102	NAD+ binding	NA
UHGV-0004835_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0004835_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0004835_2	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0004835_2	Structural annotation	PF13289	NA	NA
UHGV-0004835_3	PHROG	phrog_1847	NA	unknown function
UHGV-0004835_3	UniRef90	UniRef90_A0A1Y4RD72	ATPase	NA
UHGV-0004835_3	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0004835_3	Pfam	PF13250	NA	DUF4041
UHGV-0004835_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0004835_3	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0004835_3	Structural annotation	PF13250, PF19824	NA	NA
UHGV-0004835_4	PHROG	phrog_87	metallo-protease	other
UHGV-0004835_4	UniRef90	UniRef90_A0A413I039	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0004835_4	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0004835_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0004835_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0004835_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0004835_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0004835_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0004835_5	UniRef90	UniRef90_UPI0011DDC9CA	helix-turn-helix domain-containing protein	NA
UHGV-0004835_5	eggNOG-mapper	864563.HMPREF9166_0600	sequence-specific DNA binding	NA
UHGV-0004835_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004835_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0004835_5	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0004835_6	UniRef90	UniRef90_UPI0011DD1FEB	helix-turn-helix domain-containing protein	NA
UHGV-0004835_6	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0004835_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004835_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0004835_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0004835_7	PHROG	phrog_5765	NA	unknown function
UHGV-0004835_7	UniRef90	UniRef90_A0A6L8XU54	Helix-turn-helix domain-containing protein	NA
UHGV-0004835_7	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0004835_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004835_7	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0004835_8	PHROG	phrog_3292	NA	unknown function
UHGV-0004835_8	UniRef90	UniRef90_UPI0019599573	KTSC domain-containing protein	NA
UHGV-0004835_8	eggNOG-mapper	926692.AZYG01000059_gene89	KTSC domain	NA
UHGV-0004835_8	Pfam	PF13619	KTSC domain	KTSC
UHGV-0004835_8	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0004835_8	Structural annotation	PF13619	NA	NA
UHGV-0004835_10	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0004835_10	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0004835_10	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0004835_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0004835_15	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0004835_15	Structural annotation	PF01446	NA	NA
UHGV-0004835_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0004835_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0004835_16	UniRef90	UniRef90_A0A1C5RPI3	Ribonuclease H	NA
UHGV-0004835_16	eggNOG-mapper	1408418.JNJH01000020_gene931	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0004835_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0004835_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0004835_17	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0004835_18	PHROG	phrog_4433	NA	unknown function
UHGV-0004835_18	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0004835_18	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0004835_18	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0004835_19	PHROG	phrog_8470	NA	unknown function
UHGV-0004835_19	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0004835_19	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0004835_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0004835_19	Structural annotation	PF14284	NA	NA
UHGV-0004835_20	PHROG	phrog_15077	NA	unknown function
UHGV-0004835_20	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0004835_20	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0004835_20	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0004835_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0004835_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004835_22	UniRef90	UniRef90_A0A1C5RPL4	Single-stranded DNA-binding protein	NA
UHGV-0004835_22	eggNOG-mapper	478749.BRYFOR_09630	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0004835_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0004835_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0004835_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0004835_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0004835_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0004835_24	PHROG	phrog_7566	NA	unknown function
UHGV-0004835_24	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0004835_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0004835_26	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0004835_26	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0004835_26	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0004835_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0004835_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0004835_27	UniRef90	UniRef90_A0A373AA74	Terminase small subunit	NA
UHGV-0004835_27	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0004835_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0004835_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0004835_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0004835_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004835_28	PHROG	phrog_10250	NA	unknown function
UHGV-0004835_28	UniRef90	UniRef90_A0A373A8H5	Terminase	NA
UHGV-0004835_28	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0004835_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0004835_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0004835_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0004835_29	UniRef90	UniRef90_A0A1C5RQA3	Phage portal protein, putative, A118 family	NA
UHGV-0004835_29	eggNOG-mapper	394503.Ccel_3296	NA	NA
UHGV-0004835_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0004835_30	PHROG	phrog_25639	NA	unknown function
UHGV-0004835_30	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0004835_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0004835_31	UniRef90	UniRef90_A0A373A8K2	Minor capsid protein	NA
UHGV-0004835_31	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0004835_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0004835_31	Pfam	PF21814	NA	DUF6883
UHGV-0004835_31	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0004835_31	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0004835_32	PHROG	phrog_34731	NA	unknown function
UHGV-0004835_32	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0004835_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0004835_35	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-0004835_35	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-0004835_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0004835_35	Structural annotation	PF06810	NA	NA
UHGV-0004835_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0004835_36	UniRef90	UniRef90_A0A373AA42	Phage capsid protein	NA
UHGV-0004835_36	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0004835_36	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0004835_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0004835_37	PHROG	phrog_15682	NA	unknown function
UHGV-0004835_37	UniRef90	UniRef90_A0A841L8S8	Rho_N domain-containing protein	NA
UHGV-0004835_37	eggNOG-mapper	469618.FVAG_01311	NA	NA
UHGV-0004835_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0004835_38	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0004835_39	PHROG	phrog_8710	NA	unknown function
UHGV-0004835_39	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0004835_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0004835_40	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0004835_41	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0004835_41	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0004835_41	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0004835_41	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0004835_41	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0004835_42	PHROG	phrog_820	major tail protein	tail
UHGV-0004835_42	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0004835_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0004835_43	PHROG	phrog_8300	NA	unknown function
UHGV-0004835_43	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0004835_43	Structural annotation	PF06854	NA	NA
UHGV-0004835_44	PHROG	phrog_8355	NA	unknown function
UHGV-0004835_44	UniRef90	UniRef90_UPI00156E3928	Gp15 family bacteriophage protein	NA
UHGV-0004835_44	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0004835_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0004835_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0004835_45	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0004835_45	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0004835_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0004835_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0004835_46	PHROG	phrog_1194	NA	unknown function
UHGV-0004835_46	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0004835_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0004835_47	PHROG	phrog_6616	tail protein	tail
UHGV-0004835_47	UniRef90	UniRef90_A0A415L5E9	Peptidase S74 domain-containing protein	NA
UHGV-0004835_47	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0004835_47	COG	COG4926	Phage-related protein	NA
UHGV-0004835_47	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0004835_48	PHROG	phrog_18444	NA	unknown function
UHGV-0004835_48	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA