UHGV-0004976

Genome information

Genome length 40,002 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0004976
vOTU ID	vOTU-010157
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_B_23_1587__NODE_1041_length_43316_cov_10.836166_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.14
Jumbo phage	No

Genome content
Genome length	40,002 bps
GC content	45.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.01%
Average CDS length	593.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0004976_4	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0004976_4	UniRef90	UniRef90_D4JUZ6	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0004976_4	eggNOG-mapper	397288.C806_03244	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0004976_4	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0004976_4	Pfam	PF19481	NA	DUF6017
UHGV-0004976_4	Structural annotation	PF19481, PF06970, COG5625	NA	NA
UHGV-0004976_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0004976_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0004976_5	UniRef90	UniRef90_A0A1C6GEY5	Resolvase, N terminal domain	NA
UHGV-0004976_5	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0004976_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0004976_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0004976_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0004976_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0004976_5	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0004976_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004976_7	UniRef90	UniRef90_R5TFY8	NA	NA
UHGV-0004976_7	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0004976_7	Pfam	PF13643	NA	DUF4145
UHGV-0004976_7	Structural annotation	PF13643	NA	NA
UHGV-0004976_8	Structural annotation	PF19495, TIGR03931	NA	NA
UHGV-0004976_9	UniRef90	UniRef90_A0A3E0QU32	Minor capsid protein	NA
UHGV-0004976_9	eggNOG-mapper	218284.CCDN010000001_gene861	Phage minor capsid protein 2	NA
UHGV-0004976_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0004976_10	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-0004976_10	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0004976_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0004976_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0004976_11	UniRef90	UniRef90_D7GNX9	Predicted transcriptional regulators	NA
UHGV-0004976_11	eggNOG-mapper	1071400.LBUCD034_1604	Peptidase S24-like	NA
UHGV-0004976_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0004976_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0004976_12	UniRef90	UniRef90_A0A3D1SE14	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0004976_12	eggNOG-mapper	1385512.N784_13400	NA	NA
UHGV-0004976_12	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0004976_14	PHROG	phrog_8600	NA	unknown function
UHGV-0004976_14	UniRef90	UniRef90_UPI001C249540	YozE family protein	NA
UHGV-0004976_14	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0004976_14	Structural annotation	PF06855, MF_01538, NF010193, COG4479	NA	NA
UHGV-0004976_17	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0004976_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0004976_19	UniRef90	UniRef90_A0A355YQL4	DNA cytosine methyltransferase	NA
UHGV-0004976_19	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0004976_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0004976_19	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0004976_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0004976_20	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0004976_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0004976_20	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0004976_21	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0004976_21	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0004976_21	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0004976_21	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0004976_22	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0004976_22	PHROG	phrog_1499	NA	unknown function
UHGV-0004976_22	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-0004976_22	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0004976_22	Pfam	PF13476	AAA domain	AAA_23
UHGV-0004976_22	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0004976_22	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0004976_23	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0004976_23	UniRef90	UniRef90_UPI00041F978E	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0004976_23	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0004976_23	Pfam	PF12684	NA	DUF3799
UHGV-0004976_23	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0004976_23	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0004976_24	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0004976_24	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0004976_24	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0004976_24	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0004976_24	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0004976_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0004976_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0004976_25	UniRef90	UniRef90_A0A1C6FN64	Single-stranded DNA-binding protein	NA
UHGV-0004976_25	eggNOG-mapper	1384066.JAGT01000001_gene1404	Single-stranded DNA-binding protein	NA
UHGV-0004976_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0004976_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0004976_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0004976_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0004976_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0004976_26	PHROG	phrog_16304	NA	unknown function
UHGV-0004976_26	UniRef90	UniRef90_A0A1C6FNF0	NA	NA
UHGV-0004976_26	eggNOG-mapper	294631.Q5ZGB4_9CAUD	NA	NA
UHGV-0004976_26	Pfam	PF19808	NA	DUF6291
UHGV-0004976_26	Structural annotation	PF19808	NA	NA
UHGV-0004976_31	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0004976_31	UniRef90	UniRef90_A0A516MDE6	Putative adenine modification enzyme	NA
UHGV-0004976_31	eggNOG-mapper	411490.ANACAC_02385	COG NOG12663 non supervised orthologous group	NA
UHGV-0004976_31	Structural annotation	PF14236, MF_02210, NF007025, COG1247	NA	NA
UHGV-0004976_32	PHROG	phrog_13489	NA	unknown function
UHGV-0004976_35	Structural annotation	PF11483	NA	NA
UHGV-0004976_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0004976_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0004976_37	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0004976_38	PHROG	phrog_2412	NA	unknown function
UHGV-0004976_38	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0004976_38	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0004976_38	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0004976_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0004976_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0004976_39	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-0004976_39	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0004976_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0004976_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0004976_39	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0004976_40	PHROG	phrog_8680	NA	unknown function
UHGV-0004976_40	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-0004976_40	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0004976_40	Pfam	PF14386	NA	DUF4417
UHGV-0004976_40	Structural annotation	PF14386	NA	NA
UHGV-0004976_42	PHROG	phrog_9479	NA	unknown function
UHGV-0004976_42	Structural annotation	PF15529	NA	NA
UHGV-0004976_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-0004976_43	UniRef90	UniRef90_A0A1C6FMT2	Phage portal protein, putative, A118 family	NA
UHGV-0004976_43	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0004976_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0004976_43	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0004976_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0004976_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0004976_44	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0004976_44	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0004976_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0004976_44	COG	COG2369	NA	NA
UHGV-0004976_44	Structural annotation	PF06152	NA	NA
UHGV-0004976_45	eggNOG-mapper	754027.HMPREF9554_00527	NA	NA
UHGV-0004976_46	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0004976_46	UniRef90	UniRef90_A0A417IIQ4	MazG domain-containing protein	NA
UHGV-0004976_46	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0004976_46	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0004976_47	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0004976_47	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0004976_47	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0004976_47	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0004976_48	PHROG	phrog_267	major head protein	head and packaging
UHGV-0004976_48	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0004976_48	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0004976_48	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0004976_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0004976_50	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0004976_50	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0004976_50	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0004976_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0004976_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0004976_51	UniRef90	UniRef90_A0A355V0F3	Minor capsid protein	NA
UHGV-0004976_51	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0004976_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0004976_51	Structural annotation	PF11114	NA	NA
UHGV-0004976_52	Structural annotation	PF08873	NA	NA
UHGV-0004976_53	PHROG	phrog_820	major tail protein	tail
UHGV-0004976_53	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0004976_53	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0004976_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0004976_54	eggNOG-mapper	536233.CLO_0892	NA	NA
UHGV-0004976_54	Structural annotation	PF10666	NA	NA
UHGV-0004976_55	PHROG	phrog_706	NA	unknown function
UHGV-0004976_55	UniRef90	UniRef90_A0A1C6GMP1	Bacteriophage Gp15 protein	NA
UHGV-0004976_55	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0004976_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0004976_55	Structural annotation	PF06854	NA	NA
UHGV-0004976_56	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0004976_56	UniRef90	UniRef90_A0A1C6GMQ4	Phage-related protein	NA
UHGV-0004976_56	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0004976_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0004976_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0004976_58	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0004976_61	Structural annotation	PF21621, PF21253, MF_01537, NF007875, COG3123	NA	NA
UHGV-0004976_63	PHROG	phrog_199	holin	lysis
UHGV-0004976_63	UniRef90	UniRef90_U5F826	Toxin secretion/phage lysis holin	NA
UHGV-0004976_63	eggNOG-mapper	552396.HMPREF0863_01450	Bacteriophage holin family	NA
UHGV-0004976_63	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0004976_63	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0004976_63	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0004976_63	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0004976_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0004976_64	PHROG	phrog_1794	amidase	lysis
UHGV-0004976_64	UniRef90	UniRef90_R7KX59	Muramidase (Flagellum-specific)	NA
UHGV-0004976_64	eggNOG-mapper	1304866.K413DRAFT_1930	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0004976_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0004976_64	Pfam	PF05036	SPOR domain	SPOR
UHGV-0004976_64	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0004976_64	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA