UHGV-0005461

Genome information

vOTU vOTU-062090

Genome length 47,417 bps

CDS count 83

Completeness 99.75% (high-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0005461
vOTU ID	vOTU-062090
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_H_5_1561__NODE_152_length_113180_cov_10.193912_1
BioSample	SAMEA4765851
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.4
Jumbo phage	No

Genome content
Genome length	47,417 bps
GC content	27.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	88.18%
Average CDS length	507.90 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0005461_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0005461_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005461_2	UniRef90	UniRef90_J7HUN6	DNA-binding protein	NA
UHGV-0005461_2	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0005461_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0005461_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005461_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0005461_2	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0005461_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0005461_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005461_3	eggNOG-mapper	1121289.JHVL01000036_gene2585	Cupin domain	NA
UHGV-0005461_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005461_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0005461_3	Structural annotation	PF01381, MF_00535, NF041677, COG1396	NA	NA
UHGV-0005461_5	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0005461_5	UniRef90	UniRef90_A0A2E8DHN5	Helix-turn-helix domain-containing protein	NA
UHGV-0005461_5	eggNOG-mapper	931276.Cspa_c10030	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0005461_5	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0005461_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0005461_5	Structural annotation	PF20024, MF_01819, NF038251, COG3355	NA	NA
UHGV-0005461_6	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0005461_10	Structural annotation	PF07453	NA	NA
UHGV-0005461_11	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005461_11	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0005461_11	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0005461_12	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005461_12	UniRef90	UniRef90_A0A316MF38	PDDEXK_1 domain-containing protein	NA
UHGV-0005461_12	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-0005461_12	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0005461_12	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0005461_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0005461_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0005461_16	UniRef90	UniRef90_R5MQA9	Single-stranded DNA-binding protein	NA
UHGV-0005461_16	eggNOG-mapper	1304874.JAFY01000005_gene1248	Single-stranded DNA-binding protein	NA
UHGV-0005461_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0005461_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0005461_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0005461_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0005461_16	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0005461_19	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0005461_19	UniRef90	UniRef90_A0A3D2W6K7	NA	NA
UHGV-0005461_19	eggNOG-mapper	526218.Sterm_3423	positive regulation of ATPase activity	NA
UHGV-0005461_19	Pfam	PF11443	NA	DUF2828
UHGV-0005461_19	COG	COG2425	NA	NA
UHGV-0005461_19	Structural annotation	PF11443, MF_01340, NF041674, COG1240	NA	NA
UHGV-0005461_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0005461_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0005461_20	UniRef90	UniRef90_A0A7G9GLS4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0005461_20	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0005461_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0005461_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0005461_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0005461_23	Structural annotation	PF16677	NA	NA
UHGV-0005461_25	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0005461_25	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0005461_25	UniRef90	UniRef90_UPI00189A4482	recombinase family protein	NA
UHGV-0005461_25	eggNOG-mapper	428127.EUBDOL_01535	resolvase	NA
UHGV-0005461_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0005461_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0005461_25	Structural annotation	PF00239, NF009949, COG1961	NA	NA
UHGV-0005461_31	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0005461_31	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-0005461_31	UniRef90	UniRef90_UPI001E3B1F4A	DNA repair protein RadC	NA
UHGV-0005461_31	eggNOG-mapper	702450.CUW_2204	Belongs to the UPF0758 family	NA
UHGV-0005461_31	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0005461_31	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0005461_31	Structural annotation	PF04002, MF_00018, NF000642, COG2003	NA	NA
UHGV-0005461_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0005461_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0005461_33	UniRef90	UniRef90_R6YDA7	Single-stranded DNA-binding protein	NA
UHGV-0005461_33	eggNOG-mapper	1033810.HLPCO_000238	single-stranded DNA binding	NA
UHGV-0005461_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0005461_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0005461_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0005461_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0005461_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0005461_42	PHROG	phrog_625	NA	unknown function
UHGV-0005461_42	UniRef90	UniRef90_A0A7X5CLQ1	ASCH domain-containing protein	NA
UHGV-0005461_42	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0005461_42	Structural annotation	PF12961, NF003443, COG2947	NA	NA
UHGV-0005461_44	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0005461_45	UniRef90	UniRef90_A0A8D9UHX4	RNA repair pathway DNA polymerase beta family	NA
UHGV-0005461_45	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-0005461_48	PHROG	phrog_2251	NA	unknown function
UHGV-0005461_49	PHROG	phrog_3502	NA	unknown function
UHGV-0005461_49	UniRef90	UniRef90_A0A1H8LAR9	LexA DNA binding domain-containing protein	NA
UHGV-0005461_49	eggNOG-mapper	521460.Athe_2440	domain protein	NA
UHGV-0005461_49	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0005461_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0005461_49	Structural annotation	PF01726, MF_00732, NF006812, COG0640	NA	NA
UHGV-0005461_52	eggNOG-mapper	537007.BLAHAN_06602	NA	NA
UHGV-0005461_53	Structural annotation	PF01381	NA	NA
UHGV-0005461_55	PHROG	phrog_20735	NA	unknown function
UHGV-0005461_55	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-0005461_55	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0005461_55	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-0005461_57	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0005461_58	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0005461_58	PHROG	phrog_200	lipoprotein	other
UHGV-0005461_58	UniRef90	UniRef90_R6BHX9	PHB domain-containing protein	NA
UHGV-0005461_58	eggNOG-mapper	665956.HMPREF1032_02171	SPFH Band 7 PHB domain protein	NA
UHGV-0005461_58	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0005461_58	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0005461_58	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0005461_59	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0005461_59	UniRef90	UniRef90_A0A069D6B6	Terminase	NA
UHGV-0005461_59	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0005461_59	COG	COG5410	NA	NA
UHGV-0005461_59	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0005461_60	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0005461_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005461_60	UniRef90	UniRef90_A0A0C3MB59	XRE family transcriptional regulator	NA
UHGV-0005461_60	eggNOG-mapper	1605.Lani381_0413	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0005461_60	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0005461_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005461_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0005461_60	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0005461_62	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0005461_62	UniRef90	UniRef90_A0A1Y4N8L1	Phage repressor protein	NA
UHGV-0005461_62	eggNOG-mapper	1235755.ANAM01000006_gene2351	BRO family, N-terminal domain	NA
UHGV-0005461_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0005461_62	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0005461_62	COG	COG3617	Prophage antirepressor	NA
UHGV-0005461_62	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0005461_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0005461_63	UniRef90	UniRef90_UPI001D06C00B	phage portal protein	NA
UHGV-0005461_63	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0005461_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0005461_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0005461_65	Structural annotation	PF14265	NA	NA
UHGV-0005461_66	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0005461_66	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0005461_66	eggNOG-mapper	1203606.HMPREF1526_00325	NA	NA
UHGV-0005461_66	Pfam	PF17236	NA	DUF5309
UHGV-0005461_66	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0005461_67	UniRef90	UniRef90_UPI000F546010	phage head-tail connector protein	NA
UHGV-0005461_67	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0005461_67	Structural annotation	PF05135	NA	NA
UHGV-0005461_68	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0005461_70	UniRef90	UniRef90_UPI001D096349	HK97 gp10 family phage protein	NA
UHGV-0005461_70	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0005461_71	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0005461_72	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0005461_73	eggNOG-mapper	1121333.JMLH01000047_gene1012	NA	NA
UHGV-0005461_73	Pfam	PF16478	NA	DUF5055
UHGV-0005461_73	Structural annotation	PF16478	NA	NA
UHGV-0005461_75	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0005461_76	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005461_76	UniRef90	UniRef90_A0A7X9XQT1	HNHc domain-containing protein	NA
UHGV-0005461_76	eggNOG-mapper	1283071.R9R4B5_9CAUD	HNH endonuclease	NA
UHGV-0005461_76	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0005461_76	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0005461_76	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0005461_76	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0005461_77	PHROG	phrog_28918	NA	unknown function
UHGV-0005461_77	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0005461_77	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0005461_78	Structural annotation	PF06998, MF_00434, NF041193, COG4808	NA	NA
UHGV-0005461_79	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0005461_80	PHROG	phrog_6616	tail protein	tail
UHGV-0005461_80	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-0005461_81	PHROG	phrog_372	tail protein	tail
UHGV-0005461_81	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0005461_81	Pfam	PF05895	NA	DUF859
UHGV-0005461_81	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0005461_82	Structural annotation	PF07041	NA	NA
UHGV-0005461_83	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA