UHGV-0005562

Genome information

Genome length 31,044 bps

CDS count 40

Completeness 86.32% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0005562
vOTU ID	vOTU-037098
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_K_13_1776__NODE_2039_length_49594_cov_14.805966_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.75
Jumbo phage	No

Genome content
Genome length	31,044 bps
GC content	56.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.37%
Average CDS length	731.03 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0005562_1	KOfam	K02171	blaI; BlaI family transcriptional regulator, penicillinase repressor	NA
UHGV-0005562_1	UniRef90	UniRef90_R6HAZ7	Putative regulatory protein	NA
UHGV-0005562_1	eggNOG-mapper	411469.EUBHAL_02082	Transcriptional regulator, BlaI MecI CopY family	NA
UHGV-0005562_1	Pfam	PF03965	Penicillinase repressor	Penicillinase_R
UHGV-0005562_1	COG	COG3682	Transcriptional regulator, CopY/TcrY family	NA
UHGV-0005562_5	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0005562_5	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0005562_5	UniRef90	UniRef90_A0A8J6IP18	HD domain-containing protein	NA
UHGV-0005562_5	eggNOG-mapper	411483.FAEPRAA2165_03185	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0005562_5	Pfam	PF07514	Putative helicase	TraI_2
UHGV-0005562_5	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0005562_5	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0005562_6	PHROG	phrog_3136	NA	unknown function
UHGV-0005562_6	UniRef90	UniRef90_UPI001C018CFA	ASCH domain-containing protein	NA
UHGV-0005562_6	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0005562_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0005562_6	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0005562_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0005562_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0005562_7	UniRef90	UniRef90_A0A6H1ZDC4	Putative methyltransferase	NA
UHGV-0005562_7	eggNOG-mapper	1444310.JANV01000096_gene3256	DNA methylase	NA
UHGV-0005562_7	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-0005562_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0005562_7	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0005562_8	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0005562_8	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0005562_8	UniRef90	UniRef90_A0A2X3IKC3	Putative methylase	NA
UHGV-0005562_8	eggNOG-mapper	742735.HMPREF9467_05134	DNA methylase	NA
UHGV-0005562_8	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0005562_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0005562_8	COG	COG0863	DNA modification methylase	NA
UHGV-0005562_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0005562_9	eggNOG-mapper	525254.HMPREF0072_1311	NA	NA
UHGV-0005562_9	Structural annotation	PF21578	NA	NA
UHGV-0005562_10	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005562_10	UniRef90	UniRef90_A0A6S6XBJ8	Tn7_Tnp_TnsA_N domain-containing protein	NA
UHGV-0005562_10	Pfam	PF06356	NA	DUF1064
UHGV-0005562_10	Structural annotation	PF06356, MF_04160, NF002584	NA	NA
UHGV-0005562_11	PHROG	phrog_36399	NA	unknown function
UHGV-0005562_11	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0005562_12	PHROG	phrog_8470	NA	unknown function
UHGV-0005562_12	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-0005562_12	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-0005562_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0005562_12	Structural annotation	PF14284	NA	NA
UHGV-0005562_13	PHROG	phrog_15609	NA	unknown function
UHGV-0005562_13	UniRef90	UniRef90_A0A3A6JZQ1	NA	NA
UHGV-0005562_13	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0005562_13	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0005562_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0005562_15	UniRef90	UniRef90_A0A645DPV0	Sigma70_r4 domain-containing protein	NA
UHGV-0005562_15	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0005562_15	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0005562_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0005562_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005562_17	UniRef90	UniRef90_A0A7X5E0G7	HNH endonuclease	NA
UHGV-0005562_17	eggNOG-mapper	665956.HMPREF1032_00125	HNH nucleases	NA
UHGV-0005562_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0005562_18	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0005562_18	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0005562_18	eggNOG-mapper	665956.HMPREF1032_00124	NA	NA
UHGV-0005562_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0005562_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0005562_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0005562_19	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0005562_19	eggNOG-mapper	665956.HMPREF1032_00123	Phage terminase-like protein large subunit	NA
UHGV-0005562_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0005562_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0005562_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0005562_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0005562_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0005562_20	UniRef90	UniRef90_A0A7G8TDY8	Phage portal protein	NA
UHGV-0005562_20	eggNOG-mapper	665956.HMPREF1032_00118	Phage portal protein, HK97 family	NA
UHGV-0005562_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0005562_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0005562_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0005562_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0005562_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0005562_21	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0005562_21	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0005562_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0005562_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0005562_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0005562_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0005562_22	UniRef90	UniRef90_A0A1T4YDE5	Phage major capsid protein, HK97 family	NA
UHGV-0005562_22	eggNOG-mapper	665956.HMPREF1032_00116	Phage capsid family	NA
UHGV-0005562_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0005562_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0005562_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0005562_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0005562_24	PHROG	phrog_19734	NA	unknown function
UHGV-0005562_24	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0005562_24	eggNOG-mapper	1235798.C817_02576	NA	NA
UHGV-0005562_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0005562_25	UniRef90	UniRef90_UPI000F5C033A	HK97 gp10 family phage protein	NA
UHGV-0005562_25	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0005562_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0005562_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0005562_27	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0005562_27	UniRef90	UniRef90_A0A644VRS9	S-l_SbsC_C domain-containing protein	NA
UHGV-0005562_27	eggNOG-mapper	665956.HMPREF1032_00111	NA	NA
UHGV-0005562_27	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0005562_28	PHROG	phrog_29863	NA	unknown function
UHGV-0005562_28	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0005562_28	Structural annotation	PF17388	NA	NA
UHGV-0005562_29	eggNOG-mapper	1415774.U728_1245	NA	NA
UHGV-0005562_30	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0005562_30	UniRef90	UniRef90_A0A174XH68	Phage tail tape measure protein, TP901 family	NA
UHGV-0005562_30	eggNOG-mapper	411468.CLOSCI_00540	Phage tail tape measure protein, TP901 family	NA
UHGV-0005562_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0005562_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0005562_30	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0005562_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0005562_31	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0005562_31	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0005562_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0005562_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0005562_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0005562_32	UniRef90	UniRef90_A0A3D5L0J3	Prophage_tail domain-containing protein	NA
UHGV-0005562_32	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0005562_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0005562_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0005562_32	COG	COG4926	Phage-related protein	NA
UHGV-0005562_32	Structural annotation	PF14594, PF00629, PF03424, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0005562_34	PHROG	phrog_16573	NA	unknown function
UHGV-0005562_34	UniRef90	UniRef90_W0U658	BppU_N domain-containing protein	NA
UHGV-0005562_34	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0005562_34	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0005562_34	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0005562_35	PHROG	phrog_17147	NA	unknown function
UHGV-0005562_35	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0005562_35	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0005562_36	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0005562_36	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0005562_36	UniRef90	UniRef90_A0A357TPP5	Reverse transcriptase domain-containing protein	NA
UHGV-0005562_36	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0005562_36	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0005562_36	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0005562_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0005562_39	PHROG	phrog_291	endolysin	lysis
UHGV-0005562_39	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0005562_39	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0005562_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0005562_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0005562_40	PHROG	phrog_37799	NA	unknown function
UHGV-0005562_40	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0005562_40	eggNOG-mapper	272563.CD630_06610	Bacteriophage holin family	NA
UHGV-0005562_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0005562_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0005562_40	COG	COG4824	Phage-related holin (Lysis protein)	NA