UHGV-0005742

Genome information

Genome length 31,039 bps

CDS count 54

Completeness 92.09% (high-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0005742
vOTU ID	vOTU-060275
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_M_22_1922__NODE_592_length_72372_cov_84.149263_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.18
Jumbo phage	No

Genome content
Genome length	31,039 bps
GC content	27.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.63%
Average CDS length	516.83 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0005742_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0005742_1	PHROG	phrog_9611	endolysin	lysis
UHGV-0005742_1	UniRef90	UniRef90_A0A1V2YCI0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0005742_1	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0005742_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0005742_1	Pfam	PF06347	Bacterial SH3 domain	SH3_4
UHGV-0005742_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0005742_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0005742_1	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA
UHGV-0005742_2	PHROG	phrog_13256	NA	unknown function
UHGV-0005742_2	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0005742_4	PHROG	phrog_9116	tail protein	tail
UHGV-0005742_4	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-0005742_4	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0005742_4	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0005742_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0005742_4	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0005742_7	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0005742_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0005742_8	eggNOG-mapper	397288.C806_00771	Phage-related minor tail protein	NA
UHGV-0005742_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0005742_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0005742_9	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-0005742_9	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0005742_9	COG	COG1511	NA	NA
UHGV-0005742_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0005742_10	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0005742_10	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0005742_11	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0005742_11	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0005742_12	PHROG	phrog_706	NA	unknown function
UHGV-0005742_12	UniRef90	UniRef90_UPI000DD015CA	bacteriophage Gp15 family protein	NA
UHGV-0005742_12	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0005742_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0005742_12	Structural annotation	PF06854	NA	NA
UHGV-0005742_13	PHROG	phrog_4450	NA	unknown function
UHGV-0005742_13	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0005742_13	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0005742_13	Pfam	PF20378	NA	DUF6673
UHGV-0005742_13	Structural annotation	PF20378	NA	NA
UHGV-0005742_14	PHROG	phrog_3099	NA	unknown function
UHGV-0005742_14	eggNOG-mapper	658655.HMPREF0988_02555	NA	NA
UHGV-0005742_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0005742_15	PHROG	phrog_3266	tail completion	connector
UHGV-0005742_15	UniRef90	UniRef90_UPI001459F036	chloramphenicol resistance protein	NA
UHGV-0005742_15	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0005742_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0005742_16	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0005742_16	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-0005742_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0005742_16	Structural annotation	PF11114	NA	NA
UHGV-0005742_17	PHROG	phrog_3366	NA	unknown function
UHGV-0005742_17	Pfam	PF20536	NA	DUF6751
UHGV-0005742_17	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0005742_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0005742_18	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0005742_19	PHROG	phrog_283	major head protein	head and packaging
UHGV-0005742_19	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0005742_19	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0005742_19	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0005742_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0005742_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0005742_20	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-0005742_20	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0005742_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0005742_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0005742_22	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0005742_22	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0005742_22	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0005742_22	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0005742_22	COG	COG2369	NA	NA
UHGV-0005742_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0005742_23	UniRef90	UniRef90_A0A349GQA4	Phage capsid protein (Fragment)	NA
UHGV-0005742_23	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-0005742_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0005742_23	COG	COG2369	NA	NA
UHGV-0005742_23	Structural annotation	PF06152	NA	NA
UHGV-0005742_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0005742_24	UniRef90	UniRef90_F2JPK0	Bacteriophage portal protein, SPP1 Gp6-like protein	NA
UHGV-0005742_24	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0005742_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0005742_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0005742_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0005742_25	UniRef90	UniRef90_UPI0019D16F13	PBSX family phage terminase large subunit	NA
UHGV-0005742_25	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0005742_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0005742_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0005742_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0005742_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0005742_26	eggNOG-mapper	632518.Calow_0826	NA	NA
UHGV-0005742_34	PHROG	phrog_98	NA	unknown function
UHGV-0005742_34	UniRef90	UniRef90_A0A3D1PLG3	YopX domain-containing protein	NA
UHGV-0005742_34	eggNOG-mapper	39103.U5U4M8_9CAUD	YopX protein	NA
UHGV-0005742_34	Pfam	PF09643	YopX protein	YopX
UHGV-0005742_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0005742_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0005742_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0005742_36	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0005742_36	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0005742_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0005742_38	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0005742_38	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0005742_38	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0005742_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0005742_39	PHROG	phrog_7566	NA	unknown function
UHGV-0005742_39	UniRef90	UniRef90_A0A3A9F1H7	Phosphoenolpyruvate carboxykinase	NA
UHGV-0005742_39	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0005742_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0005742_40	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0005742_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0005742_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0005742_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0005742_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0005742_41	UniRef90	UniRef90_UPI0005436D85	site-specific DNA-methyltransferase	NA
UHGV-0005742_41	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0005742_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0005742_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0005742_41	COG	COG0863	DNA modification methylase	NA
UHGV-0005742_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0005742_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0005742_42	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0005742_42	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0005742_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0005742_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0005742_43	UniRef90	UniRef90_UPI001F28B373	siphovirus Gp157 family protein	NA
UHGV-0005742_43	eggNOG-mapper	457405.FSDG_01557	Siphovirus Gp157	NA
UHGV-0005742_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0005742_43	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0005742_45	PHROG	phrog_9804	NA	unknown function
UHGV-0005742_45	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0005742_45	eggNOG-mapper	1291050.JAGE01000002_gene3261	Loader and inhibitor of phage G40P	NA
UHGV-0005742_45	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0005742_45	Structural annotation	PF11417	NA	NA
UHGV-0005742_46	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0005742_46	UniRef90	UniRef90_A0A523QSG4	Phg_2220_C domain-containing protein	NA
UHGV-0005742_46	eggNOG-mapper	1151292.QEW_0390	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0005742_46	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0005742_46	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0005742_46	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0005742_48	PHROG	phrog_1123	NA	unknown function
UHGV-0005742_50	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0005742_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0005742_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0005742_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005742_52	UniRef90	UniRef90_UPI001C38E48B	helix-turn-helix domain-containing protein	NA
UHGV-0005742_52	eggNOG-mapper	431943.CKL_1914	TRANSCRIPTIONal	NA
UHGV-0005742_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005742_52	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0005742_52	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0005742_53	PHROG	phrog_87	metallo-protease	other
UHGV-0005742_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0005742_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0005742_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0005742_54	KOfam	K14059	int; integrase	NA
UHGV-0005742_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0005742_54	UniRef90	UniRef90_UPI000478829A	site-specific integrase	NA
UHGV-0005742_54	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-0005742_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0005742_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0005742_54	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA