UHGV-0005842

Genome information

Genome length 33,274 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0005842
vOTU ID	vOTU-067115
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_C_6_1832__NODE_12_length_324230_cov_84.559211_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.01
Jumbo phage	No

Genome content
Genome length	33,274 bps
GC content	44.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.08%
Average CDS length	622.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0005842_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0005842_1	PHROG	phrog_291	endolysin	lysis
UHGV-0005842_1	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0005842_1	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0005842_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0005842_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0005842_1	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0005842_2	PHROG	phrog_29601	NA	unknown function
UHGV-0005842_2	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-0005842_3	PHROG	phrog_134	NA	unknown function
UHGV-0005842_3	UniRef90	UniRef90_A0A349YRM6	XkdX family protein	NA
UHGV-0005842_3	eggNOG-mapper	742741.HMPREF9475_00440	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0005842_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0005842_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0005842_4	PHROG	phrog_20201	NA	unknown function
UHGV-0005842_5	PHROG	phrog_5302	tail protein	tail
UHGV-0005842_5	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0005842_5	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-0005842_5	Structural annotation	COG1262	NA	NA
UHGV-0005842_6	PHROG	phrog_19280	NA	unknown function
UHGV-0005842_6	UniRef90	UniRef90_UPI0018A009CA	BppU family phage baseplate upper protein	NA
UHGV-0005842_6	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0005842_6	Structural annotation	PF10651, TIGR02781, COG2372	NA	NA
UHGV-0005842_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0005842_8	UniRef90	UniRef90_A0A0M6WYA7	Prophage_tail domain-containing protein	NA
UHGV-0005842_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0005842_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0005842_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0005842_8	COG	COG4926	Phage-related protein	NA
UHGV-0005842_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0005842_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0005842_9	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0005842_9	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0005842_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0005842_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0005842_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0005842_10	UniRef90	UniRef90_A0A0M6WZJ0	PhageMin_Tail domain-containing protein	NA
UHGV-0005842_10	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0005842_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0005842_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0005842_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0005842_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0005842_11	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0005842_11	Structural annotation	PF06222	NA	NA
UHGV-0005842_12	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0005842_12	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-0005842_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0005842_13	eggNOG-mapper	411902.CLOBOL_03875	NA	NA
UHGV-0005842_13	Structural annotation	PF20765	NA	NA
UHGV-0005842_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0005842_14	UniRef90	UniRef90_UPI001C00E12E	HK97 gp10 family phage protein	NA
UHGV-0005842_14	eggNOG-mapper	457421.CBFG_03712	NA	NA
UHGV-0005842_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0005842_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0005842_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0005842_15	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0005842_15	eggNOG-mapper	1123263.AUKY01000046_gene471	NA	NA
UHGV-0005842_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0005842_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0005842_16	PHROG	phrog_5223	neck protein	connector
UHGV-0005842_16	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0005842_16	eggNOG-mapper	411902.CLOBOL_03878	NA	NA
UHGV-0005842_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0005842_17	UniRef90	UniRef90_A0A0M6WZM3	Bacterial surface proteins containing Ig-like domains	NA
UHGV-0005842_17	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0005842_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0005842_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0005842_17	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0005842_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0005842_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0005842_18	UniRef90	UniRef90_A0A0M6WYF6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0005842_18	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-0005842_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0005842_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0005842_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0005842_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0005842_19	UniRef90	UniRef90_B0NAT1	Phage portal protein, HK97 family	NA
UHGV-0005842_19	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0005842_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0005842_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0005842_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0005842_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0005842_20	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-0005842_20	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0005842_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0005842_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0005842_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0005842_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0005842_21	PHROG	phrog_1066	NA	unknown function
UHGV-0005842_21	UniRef90	UniRef90_B0NAT3	Putative phage terminase, small subunit, P27 family	NA
UHGV-0005842_21	eggNOG-mapper	411902.CLOBOL_03883	NA	NA
UHGV-0005842_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0005842_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0005842_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0005842_22	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-0005842_22	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-0005842_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0005842_23	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-0005842_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0005842_24	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0005842_24	Structural annotation	PF21578	NA	NA
UHGV-0005842_27	eggNOG-mapper	1235798.C817_04576	NA	NA
UHGV-0005842_29	Structural annotation	NF011508	NA	NA
UHGV-0005842_30	PHROG	phrog_15077	NA	unknown function
UHGV-0005842_30	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0005842_30	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0005842_30	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0005842_31	PHROG	phrog_8470	NA	unknown function
UHGV-0005842_31	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0005842_31	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0005842_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0005842_31	Structural annotation	PF14284	NA	NA
UHGV-0005842_32	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0005842_33	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0005842_33	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0005842_37	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0005842_39	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0005842_42	PHROG	phrog_20330	NA	unknown function
UHGV-0005842_42	eggNOG-mapper	1094508.Tsac_2450	NA	NA
UHGV-0005842_44	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0005842_46	UniRef90	UniRef90_A0A0M6WHS0	HTH cro/C1-type domain-containing protein	NA
UHGV-0005842_46	eggNOG-mapper	1385512.N784_13400	NA	NA
UHGV-0005842_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005842_46	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0005842_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0005842_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0005842_47	UniRef90	UniRef90_A0A0M6WJ36	HTH cro/C1-type domain-containing protein	NA
UHGV-0005842_47	eggNOG-mapper	641107.CDLVIII_2059	Helix-turn-helix domain protein	NA
UHGV-0005842_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0005842_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0005842_47	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0005842_48	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0005842_48	PHROG	phrog_8036	NA	unknown function
UHGV-0005842_48	UniRef90	UniRef90_A0A416EXR8	DNA damage-inducible protein D	NA
UHGV-0005842_48	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0005842_48	AcrCatalog	cluster_17589	NA	NA
UHGV-0005842_48	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0005842_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0005842_48	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0005842_48	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0005842_48	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0005842_49	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0005842_49	PHROG	phrog_95	integrase	integration and excision
UHGV-0005842_49	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-0005842_49	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0005842_49	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0005842_49	Pfam	PF07508	Recombinase	Recombinase
UHGV-0005842_49	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0005842_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0005842_49	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0005842_50	UniRef90	UniRef90_R5QKX6	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0005842_50	eggNOG-mapper	1280698.AUJS01000002_gene2767	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0005842_50	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA