UHGV-0006194

Genome information

Genome length 28,748 bps

CDS count 52

Completeness 76.54% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0006194
vOTU ID	vOTU-038385
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_G_19_1739__NODE_601_length_79784_cov_5.269412_1
BioSample	SAMEA4766019
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.83
Jumbo phage	No

Genome content
Genome length	28,748 bps
GC content	28.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.62%
Average CDS length	510.29 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0006194_1	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0006194_1	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0006194_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0006194_2	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0006194_2	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0006194_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0006194_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006194_2	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0006194_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0006194_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0006194_3	UniRef90	UniRef90_R7IS09	Single-stranded DNA-binding protein	NA
UHGV-0006194_3	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0006194_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0006194_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0006194_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006194_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0006194_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0006194_4	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0006194_4	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0006194_4	Pfam	PF05772	NinB protein	NinB
UHGV-0006194_4	Structural annotation	NF007281	NA	NA
UHGV-0006194_7	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0006194_7	UniRef90	UniRef90_UPI001C124D77	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0006194_7	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0006194_7	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0006194_8	PHROG	phrog_9804	NA	unknown function
UHGV-0006194_8	UniRef90	UniRef90_A0A3P6JF27	Loader and inhibitor of phage G40P	NA
UHGV-0006194_8	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0006194_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0006194_8	Structural annotation	PF11417	NA	NA
UHGV-0006194_9	PHROG	phrog_1123	NA	unknown function
UHGV-0006194_9	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-0006194_9	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0006194_9	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0006194_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0006194_13	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0006194_13	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-0006194_13	Pfam	PF06356	NA	DUF1064
UHGV-0006194_13	Structural annotation	PF06356	NA	NA
UHGV-0006194_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0006194_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0006194_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0006194_26	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0006194_26	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0006194_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0006194_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0006194_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0006194_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0006194_27	PHROG	phrog_8711	terminase large subunit	head and packaging
UHGV-0006194_27	UniRef90	UniRef90_A0A7G9B1K2	Terminase_3 domain-containing protein	NA
UHGV-0006194_27	eggNOG-mapper	1203606.HMPREF1526_00320	Phage terminase, large subunit, PBSX family	NA
UHGV-0006194_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0006194_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0006194_27	Structural annotation	PF04466	NA	NA
UHGV-0006194_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0006194_28	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0006194_28	UniRef90	UniRef90_A0A0D1XVP2	Phage terminase large subunit	NA
UHGV-0006194_28	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-0006194_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0006194_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0006194_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0006194_28	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0006194_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0006194_29	UniRef90	UniRef90_A0A5C0SEG2	Phage portal protein	NA
UHGV-0006194_29	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0006194_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0006194_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0006194_30	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0006194_30	UniRef90	UniRef90_A0A1M6MYA3	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0006194_30	eggNOG-mapper	1123304.AQYA01000037_gene216	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0006194_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0006194_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0006194_30	COG	COG2369	NA	NA
UHGV-0006194_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0006194_31	eggNOG-mapper	536232.CLM_2661	Phage Mu protein F like protein	NA
UHGV-0006194_31	COG	COG2369	NA	NA
UHGV-0006194_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0006194_33	UniRef90	UniRef90_A0A0L0W6M6	Phage minor structural protein GP20	NA
UHGV-0006194_33	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0006194_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0006194_33	Structural annotation	PF06810	NA	NA
UHGV-0006194_34	PHROG	phrog_283	major head protein	head and packaging
UHGV-0006194_34	UniRef90	UniRef90_UPI000DE2D5A5	P22 coat protein	NA
UHGV-0006194_34	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0006194_34	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0006194_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0006194_36	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0006194_36	eggNOG-mapper	1430331.EP10_10375	NA	NA
UHGV-0006194_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0006194_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0006194_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0006194_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0006194_38	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0006194_38	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0006194_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0006194_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0006194_38	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0006194_40	PHROG	phrog_78	tail terminator	connector
UHGV-0006194_40	UniRef90	UniRef90_A0A7W2AJJ9	NA	NA
UHGV-0006194_40	eggNOG-mapper	1329516.JPST01000016_gene402	NA	NA
UHGV-0006194_40	Structural annotation	PF05657	NA	NA
UHGV-0006194_41	PHROG	phrog_88	major tail protein	tail
UHGV-0006194_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0006194_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0006194_43	Structural annotation	PF02136, TIGR02246, COG4319	NA	NA
UHGV-0006194_44	Structural annotation	PF06791	NA	NA
UHGV-0006194_45	PHROG	phrog_7078	NA	unknown function
UHGV-0006194_45	UniRef90	UniRef90_A0A7G3E3I8	Phage tail tape measure protein	NA
UHGV-0006194_45	eggNOG-mapper	743719.PaelaDRAFT_5670	phage tail tape measure protein	NA
UHGV-0006194_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0006194_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0006194_47	UniRef90	UniRef90_UPI001784C83A	phage tail family protein	NA
UHGV-0006194_47	eggNOG-mapper	1337877.R9W0N0_9CAUD	Phage tail protein	NA
UHGV-0006194_47	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0006194_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0006194_48	UniRef90	UniRef90_UPI0006847BDA	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0006194_48	eggNOG-mapper	235909.GK0542	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0006194_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0006194_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0006194_49	PHROG	phrog_1220	head protein	head and packaging
UHGV-0006194_49	UniRef90	UniRef90_A0A0K2CYU2	Tail protein	NA
UHGV-0006194_49	eggNOG-mapper	1337877.R9VWU9_9CAUD	cell adhesion	NA
UHGV-0006194_50	Structural annotation	PF14400	NA	NA
UHGV-0006194_51	Structural annotation	PF17735	NA	NA
UHGV-0006194_52	Structural annotation	PF17900	NA	NA