UHGV-0006724

Genome information

Genome length 32,036 bps

CDS count 47

Completeness 75.35% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0006724
vOTU ID	vOTU-040631
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_B_9_1942__NODE_130_length_201394_cov_16.025497_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.8
Jumbo phage	No

Genome content
Genome length	32,036 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.03%
Average CDS length	617.81 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0006724_1	PHROG	phrog_1129	holin	lysis
UHGV-0006724_1	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0006724_1	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0006724_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0006724_1	Structural annotation	PF06946	NA	NA
UHGV-0006724_2	PHROG	phrog_4105	NA	unknown function
UHGV-0006724_2	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0006724_5	PHROG	phrog_18725	NA	unknown function
UHGV-0006724_5	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0006724_7	PHROG	phrog_13879	NA	unknown function
UHGV-0006724_7	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0006724_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0006724_8	PHROG	phrog_1194	NA	unknown function
UHGV-0006724_8	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0006724_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0006724_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0006724_9	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0006724_9	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0006724_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0006724_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0006724_10	PHROG	phrog_706	NA	unknown function
UHGV-0006724_10	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0006724_10	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0006724_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0006724_10	Structural annotation	PF06854	NA	NA
UHGV-0006724_11	Structural annotation	PF10666	NA	NA
UHGV-0006724_12	PHROG	phrog_3099	NA	unknown function
UHGV-0006724_12	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0006724_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0006724_13	PHROG	phrog_3266	tail completion	connector
UHGV-0006724_13	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0006724_13	Structural annotation	PF12691	NA	NA
UHGV-0006724_14	PHROG	phrog_3366	NA	unknown function
UHGV-0006724_14	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0006724_14	Pfam	PF20536	NA	DUF6751
UHGV-0006724_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0006724_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0006724_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0006724_16	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0006724_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-0006724_17	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0006724_17	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0006724_17	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0006724_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0006724_18	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0006724_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0006724_20	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0006724_20	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0006724_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0006724_20	COG	COG2369	NA	NA
UHGV-0006724_20	Structural annotation	PF06152	NA	NA
UHGV-0006724_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0006724_21	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0006724_21	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0006724_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0006724_21	Structural annotation	PF11114	NA	NA
UHGV-0006724_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0006724_22	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0006724_22	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0006724_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0006724_23	PHROG	phrog_1233	NA	unknown function
UHGV-0006724_23	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0006724_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0006724_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0006724_24	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0006724_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0006724_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0006724_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0006724_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0006724_24	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0006724_26	PHROG	phrog_33130	NA	unknown function
UHGV-0006724_26	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0006724_26	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0006724_27	eggNOG-mapper	97139.C824_04735	NA	NA
UHGV-0006724_27	Pfam	PF18863	AbiJ N-terminal domain 4	AbiJ_NTD4
UHGV-0006724_27	Structural annotation	PF18863, PF05168, COG1895	NA	NA
UHGV-0006724_29	PHROG	phrog_15768	NA	unknown function
UHGV-0006724_29	UniRef90	UniRef90_A0A1P8Q2G7	DnaB_2 domain-containing protein	NA
UHGV-0006724_29	eggNOG-mapper	1329516.JPST01000018_gene2628	DnaD domain protein	NA
UHGV-0006724_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0006724_29	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0006724_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0006724_30	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0006724_30	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0006724_30	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0006724_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0006724_30	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0006724_32	PHROG	phrog_7566	NA	unknown function
UHGV-0006724_32	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0006724_32	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0006724_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0006724_33	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0006724_34	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0006724_34	UniRef90	UniRef90_A0A412KFC1	Single-stranded DNA-binding protein	NA
UHGV-0006724_34	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0006724_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-0006724_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006724_34	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0006724_35	PHROG	phrog_674	NA	unknown function
UHGV-0006724_35	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0006724_35	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0006724_35	Pfam	PF07083	NA	DUF1351
UHGV-0006724_35	Structural annotation	PF07083	NA	NA
UHGV-0006724_36	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0006724_38	PHROG	phrog_6058	NA	unknown function
UHGV-0006724_38	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0006724_38	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0006724_38	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0006724_39	PHROG	phrog_3292	NA	unknown function
UHGV-0006724_39	UniRef90	UniRef90_UPI0019599573	KTSC domain-containing protein	NA
UHGV-0006724_39	eggNOG-mapper	1051501.AYTL01000027_gene762	KTSC domain	NA
UHGV-0006724_39	Pfam	PF13619	KTSC domain	KTSC
UHGV-0006724_39	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0006724_39	Structural annotation	PF13619	NA	NA
UHGV-0006724_40	PHROG	phrog_5765	NA	unknown function
UHGV-0006724_40	UniRef90	UniRef90_A0A414SEW2	BC1881 family protein	NA
UHGV-0006724_40	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0006724_40	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0006724_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0006724_43	UniRef90	UniRef90_A0A414UW43	XRE family transcriptional regulator	NA
UHGV-0006724_43	eggNOG-mapper	743719.PaelaDRAFT_5623	Helix-turn-helix XRE-family like proteins	NA
UHGV-0006724_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0006724_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0006724_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0006724_44	UniRef90	UniRef90_A0A414UVW2	XRE family transcriptional regulator	NA
UHGV-0006724_44	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0006724_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0006724_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0006724_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0006724_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0006724_44	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0006724_45	PHROG	phrog_1847	NA	unknown function
UHGV-0006724_45	UniRef90	UniRef90_A0A4V0Z837	T5orf172 domain-containing protein	NA
UHGV-0006724_45	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0006724_45	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0006724_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0006724_45	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0006724_46	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0006724_46	UniRef90	UniRef90_A0A174JNM3	Abortive infection bacteriophage resistance protein	NA
UHGV-0006724_46	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-0006724_46	PADLOC	AbiD	AbiD	Abi
UHGV-0006724_46	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0006724_46	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0006724_46	Structural annotation	PF07751, COG4823	NA	NA