UHGV-0006920

Genome information

vOTU vOTU-031963

Genome length 33,683 bps

CDS count 56

Completeness 88.00% (medium-quality)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-0006920
vOTU ID	vOTU-031963
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_23_2677__NODE_1237_length_44750_cov_43.454391_1
BioSample	SAMEA4766412
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.99
Jumbo phage	No

Genome content
Genome length	33,683 bps
GC content	28.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.19%
Average CDS length	563.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0006920_2	PHROG	phrog_6616	tail protein	tail
UHGV-0006920_2	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0006920_2	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-0006920_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0006920_3	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0006920_4	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0006920_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0006920_4	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0006920_4	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0006920_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0006920_5	PHROG	phrog_706	NA	unknown function
UHGV-0006920_5	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0006920_5	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0006920_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0006920_5	Structural annotation	PF06854	NA	NA
UHGV-0006920_6	Structural annotation	PF10666	NA	NA
UHGV-0006920_7	PHROG	phrog_3099	NA	unknown function
UHGV-0006920_7	UniRef90	UniRef90_A0A7M3SAI1	S-l_SbsC_C domain-containing protein	NA
UHGV-0006920_7	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-0006920_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0006920_8	PHROG	phrog_3266	tail completion	connector
UHGV-0006920_8	UniRef90	UniRef90_A0A353JB81	Chloramphenicol resistance protein	NA
UHGV-0006920_8	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0006920_8	Structural annotation	PF12691	NA	NA
UHGV-0006920_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0006920_9	eggNOG-mapper	397290.C810_05200	NA	NA
UHGV-0006920_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0006920_9	Structural annotation	PF11114	NA	NA
UHGV-0006920_10	PHROG	phrog_3366	NA	unknown function
UHGV-0006920_10	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0006920_10	Pfam	PF20536	NA	DUF6751
UHGV-0006920_10	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0006920_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0006920_12	PHROG	phrog_283	major head protein	head and packaging
UHGV-0006920_12	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0006920_12	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0006920_12	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0006920_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0006920_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0006920_13	UniRef90	UniRef90_A0A843HUH9	Phage scaffolding protein (Fragment)	NA
UHGV-0006920_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0006920_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0006920_14	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0006920_14	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0006920_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0006920_14	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0006920_14	COG	COG2369	NA	NA
UHGV-0006920_14	Structural annotation	PF06152	NA	NA
UHGV-0006920_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0006920_15	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0006920_15	eggNOG-mapper	663278.Ethha_0090	NA	NA
UHGV-0006920_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0006920_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0006920_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0006920_16	UniRef90	UniRef90_A0A353JAA1	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-0006920_16	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0006920_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0006920_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0006920_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0006920_16	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0006920_18	Structural annotation	PF16535, PF04545	NA	NA
UHGV-0006920_19	Structural annotation	PF10654	NA	NA
UHGV-0006920_28	UniRef90	UniRef90_A0A8B6MGU2	NUMOD4 domain-containing protein	NA
UHGV-0006920_28	eggNOG-mapper	1500386.A0A060AFF3_9CAUD	HNH endonuclease	NA
UHGV-0006920_28	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0006920_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0006920_38	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0006920_38	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0006920_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0006920_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0006920_39	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-0006920_39	eggNOG-mapper	1408417.JHYB01000002_gene700	Single-stranded DNA-binding protein	NA
UHGV-0006920_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0006920_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0006920_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006920_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0006920_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0006920_40	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0006920_40	UniRef90	UniRef90_A0A350H2L7	YqaJ domain-containing protein	NA
UHGV-0006920_40	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0006920_40	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0006920_40	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0006920_40	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0006920_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0006920_41	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0006920_41	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0006920_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0006920_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006920_41	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0006920_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0006920_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0006920_42	UniRef90	UniRef90_A0A7C6IJ08	Single-stranded DNA-binding protein	NA
UHGV-0006920_42	eggNOG-mapper	1403313.AXBR01000026_gene5185	Single-stranded DNA-binding protein	NA
UHGV-0006920_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0006920_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0006920_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0006920_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0006920_44	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0006920_44	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0006920_45	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0006920_45	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0006920_45	eggNOG-mapper	1117379.BABA_09106	DNA replication protein DnaD	NA
UHGV-0006920_45	Pfam	PF19808	NA	DUF6291
UHGV-0006920_45	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0006920_45	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0006920_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0006920_45	Structural annotation	PF19808	NA	NA
UHGV-0006920_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0006920_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0006920_49	UniRef90	UniRef90_A0A496PAE8	XRE family transcriptional regulator	NA
UHGV-0006920_49	eggNOG-mapper	546275.FUSPEROL_00457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0006920_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0006920_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0006920_49	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0006920_50	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0006920_50	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0006920_50	COG	COG3860	NA	NA
UHGV-0006920_51	UniRef90	UniRef90_UPI00040193D9	NA	NA
UHGV-0006920_51	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0006920_51	Pfam	PF05339	NA	DUF739
UHGV-0006920_51	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0006920_51	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0006920_52	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0006920_52	eggNOG-mapper	1121947.AUHK01000002_gene902	Peptidase S24-like	NA
UHGV-0006920_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0006920_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0006920_52	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0006920_53	PHROG	phrog_15286	NA	unknown function
UHGV-0006920_53	UniRef90	UniRef90_R5PQ40	Bro-N domain-containing protein	NA
UHGV-0006920_53	eggNOG-mapper	860228.Ccan_23730	BRO family, N-terminal domain	NA
UHGV-0006920_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0006920_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0006920_54	PHROG	phrog_5978	NA	unknown function
UHGV-0006920_54	UniRef90	UniRef90_A0A7X9GD35	Fic family protein	NA
UHGV-0006920_54	eggNOG-mapper	877424.ATWC01000007_gene215	Fic family	NA
UHGV-0006920_54	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0006920_54	COG	COG3177	Fic family protein	NA
UHGV-0006920_54	Structural annotation	PF02661, PF07106, TIGR02613, NF000244, COG3177	NA	NA
UHGV-0006920_55	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0006920_55	UniRef90	UniRef90_A0A356K1I1	DNA-binding protein	NA
UHGV-0006920_55	eggNOG-mapper	428125.CLOLEP_01836	COG NOG08824 non supervised orthologous group	NA
UHGV-0006920_55	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0006920_55	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0006920_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0006920_56	PHROG	phrog_95	integrase	integration and excision
UHGV-0006920_56	UniRef90	UniRef90_UPI001BAD55EF	recombinase family protein	NA
UHGV-0006920_56	eggNOG-mapper	1120998.AUFC01000013_gene2937	NA	NA
UHGV-0006920_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0006920_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-0006920_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0006920_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0006920_56	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA