UHGV-0007077

Genome information

Genome length 23,133 bps

CDS count 29

Completeness 57.59% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007077
vOTU ID	vOTU-024774
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_I_17_2476__NODE_2753_length_36915_cov_12.454666_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.45
Jumbo phage	No

Genome content
Genome length	23,133 bps
GC content	41.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.02%
Average CDS length	735.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007077_1	eggNOG-mapper	411473.RUMCAL_01568	NA	NA
UHGV-0007077_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0007077_2	PHROG	phrog_291	endolysin	lysis
UHGV-0007077_2	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0007077_2	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-0007077_2	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0007077_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0007077_2	COG	COG3108	NA	NA
UHGV-0007077_2	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0007077_4	UniRef90	UniRef90_A0A6N2ZL57	HTH cro/C1-type domain-containing protein	NA
UHGV-0007077_4	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0007077_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0007077_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0007077_5	PHROG	phrog_443	holin	lysis
UHGV-0007077_5	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0007077_5	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0007077_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0007077_5	Structural annotation	PF16945	NA	NA
UHGV-0007077_6	PHROG	phrog_4105	NA	unknown function
UHGV-0007077_6	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0007077_7	PHROG	phrog_1220	head protein	head and packaging
UHGV-0007077_7	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0007077_7	Structural annotation	PF20747	NA	NA
UHGV-0007077_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0007077_8	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0007077_8	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0007077_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0007077_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0007077_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0007077_9	UniRef90	UniRef90_A0A843FD70	Phage tail family protein	NA
UHGV-0007077_9	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-0007077_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0007077_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0007077_9	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0007077_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0007077_10	PHROG	phrog_23464	NA	unknown function
UHGV-0007077_10	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0007077_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0007077_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0007077_13	PHROG	phrog_88	major tail protein	tail
UHGV-0007077_13	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0007077_13	eggNOG-mapper	1408303.JNJJ01000024_gene3001	phage major tail protein, phi13 family	NA
UHGV-0007077_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0007077_13	COG	COG5492	NA	NA
UHGV-0007077_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0007077_14	Structural annotation	PF05657	NA	NA
UHGV-0007077_15	Structural annotation	TIGR01725	NA	NA
UHGV-0007077_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0007077_16	UniRef90	UniRef90_R7FBN9	Putative phage head-tail adaptor	NA
UHGV-0007077_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0007077_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0007077_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0007077_17	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0007077_17	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0007077_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0007077_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0007077_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0007077_18	UniRef90	UniRef90_R7FC89	Phage major capsid protein HK97 family	NA
UHGV-0007077_18	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0007077_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0007077_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0007077_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0007077_18	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0007077_19	KOfam	K06904	NA	NA
UHGV-0007077_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0007077_19	UniRef90	UniRef90_R7F9U5	HK97 family phage prohead protease	NA
UHGV-0007077_19	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0007077_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0007077_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0007077_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0007077_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0007077_20	PHROG	phrog_25979	NA	unknown function
UHGV-0007077_20	eggNOG-mapper	411473.RUMCAL_02827	alpha-ribazole phosphatase activity	NA
UHGV-0007077_20	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0007077_20	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0007077_20	Structural annotation	PF00629, NF038128	NA	NA
UHGV-0007077_21	Structural annotation	PF20010	NA	NA
UHGV-0007077_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0007077_22	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0007077_22	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0007077_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0007077_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0007077_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0007077_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0007077_23	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0007077_23	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0007077_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0007077_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0007077_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0007077_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0007077_24	PHROG	phrog_1066	NA	unknown function
UHGV-0007077_25	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0007077_25	UniRef90	UniRef90_A0A6N2W7C0	HNH endonuclease	NA
UHGV-0007077_25	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0007077_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0007077_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0007077_25	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0007077_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0007077_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0007077_26	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0007077_26	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0007077_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007077_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0007077_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0007077_27	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0007077_28	PHROG	phrog_824	NA	unknown function
UHGV-0007077_28	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0007077_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0007077_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0007077_28	Structural annotation	PF08774	NA	NA
UHGV-0007077_29	Structural annotation	PF13613	NA	NA