UHGV-0007220

Genome information

Genome length 43,297 bps

CDS count 73

Completeness 90.72% (high-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007220
vOTU ID	vOTU-065134
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_J_18_1660__NODE_187_length_179274_cov_44.639051_1
BioSample	SAMEA4765940
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.37
Jumbo phage	No

Genome content
Genome length	43,297 bps
GC content	28.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	86.93%
Average CDS length	519.33 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007220_2	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0007220_4	PHROG	phrog_372	tail protein	tail
UHGV-0007220_4	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0007220_4	eggNOG-mapper	1507.HMPREF0262_00218	tail collar domain protein	NA
UHGV-0007220_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0007220_4	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG3401	NA	NA
UHGV-0007220_5	PHROG	phrog_6616	tail protein	tail
UHGV-0007220_5	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-0007220_6	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0007220_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0007220_8	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0007220_8	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0007220_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0007220_9	UniRef90	UniRef90_A0A2Z2GSW6	HNH endonuclease	NA
UHGV-0007220_9	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0007220_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0007220_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0007220_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0007220_9	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0007220_9	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0007220_10	eggNOG-mapper	246194.CHY_1662	lysine exporter protein (LysE YggA)	NA
UHGV-0007220_10	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0007220_12	Pfam	PF16478	NA	DUF5055
UHGV-0007220_12	Structural annotation	PF16478	NA	NA
UHGV-0007220_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0007220_14	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0007220_15	UniRef90	UniRef90_UPI001D096349	HK97 gp10 family phage protein	NA
UHGV-0007220_15	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0007220_17	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0007220_18	Structural annotation	PF05135	NA	NA
UHGV-0007220_19	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0007220_19	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0007220_19	eggNOG-mapper	1203606.HMPREF1526_00325	NA	NA
UHGV-0007220_19	Pfam	PF17236	NA	DUF5309
UHGV-0007220_19	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0007220_20	Structural annotation	PF14265	NA	NA
UHGV-0007220_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0007220_21	UniRef90	UniRef90_UPI001D06C00B	phage portal protein	NA
UHGV-0007220_21	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0007220_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0007220_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0007220_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0007220_22	UniRef90	UniRef90_UPI0013EC3644	phage terminase large subunit	NA
UHGV-0007220_22	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0007220_22	COG	COG5410	NA	NA
UHGV-0007220_22	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0007220_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0007220_23	UniRef90	UniRef90_UPI001F1AF0A7	NUMOD4 domain-containing protein	NA
UHGV-0007220_23	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-0007220_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0007220_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0007220_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0007220_23	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0007220_23	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0007220_24	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0007220_24	PHROG	phrog_200	lipoprotein	other
UHGV-0007220_24	UniRef90	UniRef90_R6BHX9	PHB domain-containing protein	NA
UHGV-0007220_24	eggNOG-mapper	649747.HMPREF0083_03347	HflC protein	NA
UHGV-0007220_24	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0007220_24	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0007220_24	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0007220_25	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0007220_26	PHROG	phrog_301	secreted protein	other
UHGV-0007220_26	UniRef90	UniRef90_UPI000B447155	NA	NA
UHGV-0007220_26	eggNOG-mapper	1458670.W8NP19_9CAUD	NA	NA
UHGV-0007220_26	Structural annotation	PF07509, MF_00720, NF038397, COG3390	NA	NA
UHGV-0007220_29	PHROG	phrog_20735	NA	unknown function
UHGV-0007220_29	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-0007220_29	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0007220_29	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-0007220_30	Structural annotation	PF01381	NA	NA
UHGV-0007220_31	eggNOG-mapper	1280706.AUJE01000003_gene2269	NA	NA
UHGV-0007220_33	PHROG	phrog_3502	NA	unknown function
UHGV-0007220_33	UniRef90	UniRef90_A0A355D930	Transcriptional regulator	NA
UHGV-0007220_33	eggNOG-mapper	74546.PMT9312_1356	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0007220_33	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0007220_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0007220_33	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0007220_36	PHROG	phrog_4601	NA	unknown function
UHGV-0007220_39	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0007220_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0007220_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0007220_49	UniRef90	UniRef90_R5HKG1	Single-stranded DNA-binding protein	NA
UHGV-0007220_49	eggNOG-mapper	1541959.KQ51_01279	Single-strand binding protein family	NA
UHGV-0007220_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0007220_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0007220_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0007220_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0007220_49	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0007220_53	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0007220_53	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0007220_53	UniRef90	UniRef90_A0A3A9IGT8	Recombinase family protein	NA
UHGV-0007220_53	eggNOG-mapper	1235835.C814_02364	Resolvase, N terminal domain	NA
UHGV-0007220_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0007220_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0007220_53	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0007220_55	Structural annotation	PF16677	NA	NA
UHGV-0007220_57	KOfam	K03700	recU; recombination protein U	NA
UHGV-0007220_57	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0007220_57	UniRef90	UniRef90_A0A7K3ZIM8	Holliday junction resolvase RecU	NA
UHGV-0007220_57	eggNOG-mapper	1391647.AVSV01000003_gene1795	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0007220_57	Pfam	PF03838	Recombination protein U	RecU
UHGV-0007220_57	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0007220_57	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0007220_62	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0007220_62	UniRef90	UniRef90_A0A482MHZ5	Nucleotide binding protein	NA
UHGV-0007220_62	eggNOG-mapper	279808.SH2384	AAA domain	NA
UHGV-0007220_62	Pfam	PF13479	AAA domain	AAA_24
UHGV-0007220_63	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0007220_63	UniRef90	UniRef90_A0A3B8SUV1	Endonuclease	NA
UHGV-0007220_63	eggNOG-mapper	1121286.AUMT01000013_gene2588	HNH endonuclease	NA
UHGV-0007220_63	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0007220_63	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0007220_63	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0007220_63	Structural annotation	PF07463	NA	NA
UHGV-0007220_64	PHROG	phrog_20113	NA	unknown function
UHGV-0007220_64	eggNOG-mapper	10736.A0A1P8CWZ3_BPPHT	NA	NA
UHGV-0007220_64	dbAPIS	APIS005	Gad1 forms an octameric web that encases the GajAB complex and inhibits DNA recognition and cleavage.	NA
UHGV-0007220_65	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0007220_65	UniRef90	UniRef90_A0A2U1K0R2	PDDEXK_1 domain-containing protein	NA
UHGV-0007220_65	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0007220_65	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0007220_68	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0007220_68	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0007220_68	UniRef90	UniRef90_W1U6W9	DNA helicase	NA
UHGV-0007220_68	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0007220_68	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0007220_68	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0007220_68	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0007220_69	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0007220_69	UniRef90	UniRef90_A0A5D4KDX5	Alpha/beta hydrolase	NA
UHGV-0007220_69	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0007220_69	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0007220_69	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0007220_69	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0007220_69	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0007220_69	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0007220_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007220_72	Structural annotation	PF01381, MF_00535, NF041677, COG1396	NA	NA
UHGV-0007220_73	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0007220_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007220_73	UniRef90	UniRef90_UPI001B937D3C	helix-turn-helix domain-containing protein	NA
UHGV-0007220_73	eggNOG-mapper	1123308.KB904555_gene919	Transcriptional	NA
UHGV-0007220_73	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0007220_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007220_73	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0007220_73	Structural annotation	PF01381, NF041951, COG1396	NA	NA