UHGV-0007243

Genome information

Genome length 40,194 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007243
vOTU ID	vOTU-008272
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_B_22_1164__NODE_1190_length_53377_cov_150.324765_1
BioSample	SAMEA4765624
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.91
Jumbo phage	No

Genome content
Genome length	40,194 bps
GC content	58.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.82%
Average CDS length	756.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007243_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0007243_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0007243_1	UniRef90	UniRef90_G4KP73	Putative site-specific recombinase	NA
UHGV-0007243_1	eggNOG-mapper	693746.OBV_21880	Resolvase, N terminal domain	NA
UHGV-0007243_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0007243_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0007243_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0007243_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0007243_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0007243_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0007243_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007243_2	UniRef90	UniRef90_A0A1G3MEL0	Transcriptional regulator	NA
UHGV-0007243_2	eggNOG-mapper	1295642.H839_08059	Transcriptional	NA
UHGV-0007243_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0007243_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007243_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0007243_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0007243_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007243_3	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-0007243_3	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0007243_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007243_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0007243_3	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0007243_4	UniRef90	UniRef90_A0A413EDD9	XRE family transcriptional regulator	NA
UHGV-0007243_4	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0007243_4	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0007243_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0007243_5	UniRef90	UniRef90_A0A412MEV1	Carboxypeptidase	NA
UHGV-0007243_5	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0007243_6	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0007243_6	UniRef90	UniRef90_UPI00109BC3B9	NA	NA
UHGV-0007243_6	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0007243_6	Structural annotation	COG2250	NA	NA
UHGV-0007243_7	eggNOG-mapper	693746.OBV_21850	NA	NA
UHGV-0007243_8	Structural annotation	PF15591, MF_01549, NF007981	NA	NA
UHGV-0007243_12	PHROG	phrog_38338	NA	unknown function
UHGV-0007243_12	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0007243_13	PHROG	phrog_8470	NA	unknown function
UHGV-0007243_13	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-0007243_13	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0007243_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0007243_13	Structural annotation	PF14284	NA	NA
UHGV-0007243_14	PHROG	phrog_15609	NA	unknown function
UHGV-0007243_14	UniRef90	UniRef90_UPI00195AE375	NA	NA
UHGV-0007243_14	eggNOG-mapper	693746.OBV_25390	NA	NA
UHGV-0007243_14	Pfam	PF11300	NA	DUF3102
UHGV-0007243_14	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0007243_14	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0007243_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0007243_15	UniRef90	UniRef90_R6TQ60	Putative terminase large subunit	NA
UHGV-0007243_15	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0007243_15	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0007243_15	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0007243_17	Pfam	PF04448	NA	DUF551
UHGV-0007243_19	PHROG	phrog_3136	NA	unknown function
UHGV-0007243_19	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0007243_19	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0007243_19	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0007243_24	PHROG	phrog_38832	NA	unknown function
UHGV-0007243_24	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0007243_26	Structural annotation	NF040595	NA	NA
UHGV-0007243_28	PHROG	phrog_23442	NA	unknown function
UHGV-0007243_28	PADLOC	Effector_00046	2TM	CBASS
UHGV-0007243_28	Pfam	PF18153	SMODS-associating 2TM, beta-strand rich effector domain	S_2TMBeta
UHGV-0007243_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0007243_29	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0007243_29	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0007243_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0007243_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0007243_31	UniRef90	UniRef90_G4KPV4	Terminase small subunit family protein	NA
UHGV-0007243_31	eggNOG-mapper	693746.OBV_23940	DNA packaging	NA
UHGV-0007243_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007243_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0007243_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0007243_32	PHROG	phrog_156	portal protein	head and packaging
UHGV-0007243_32	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0007243_32	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0007243_33	Structural annotation	PF04606	NA	NA
UHGV-0007243_35	PHROG	phrog_35275	NA	unknown function
UHGV-0007243_35	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0007243_36	PHROG	phrog_24113	NA	unknown function
UHGV-0007243_36	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0007243_36	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0007243_37	PHROG	phrog_371	major head protein	head and packaging
UHGV-0007243_37	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0007243_37	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-0007243_37	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0007243_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0007243_38	PHROG	phrog_13046	NA	unknown function
UHGV-0007243_38	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0007243_38	Structural annotation	PF20387	NA	NA
UHGV-0007243_39	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0007243_39	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0007243_39	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0007243_40	PHROG	phrog_17196	kinase	other
UHGV-0007243_40	eggNOG-mapper	1232449.BAHV02000016_gene1815	NA	NA
UHGV-0007243_42	PHROG	phrog_19111	NA	unknown function
UHGV-0007243_42	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0007243_42	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0007243_43	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0007243_43	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0007243_45	PHROG	phrog_1863	NA	unknown function
UHGV-0007243_45	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0007243_46	PHROG	phrog_1129	holin	lysis
UHGV-0007243_46	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0007243_46	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0007243_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0007243_46	Structural annotation	PF06946	NA	NA
UHGV-0007243_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0007243_47	PHROG	phrog_1493	endolysin	lysis
UHGV-0007243_47	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0007243_47	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0007243_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0007243_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0007243_47	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0007243_47	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0007243_48	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0007243_49	PHROG	phrog_14770	NA	unknown function
UHGV-0007243_49	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0007243_49	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0007243_49	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0007243_49	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0007243_49	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA