UHGV-0007562

Genome information

Genome length 34,054 bps

CDS count 50

Completeness 88.23% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007562
vOTU ID	vOTU-035215
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_D_16_1621__NODE_644_length_108661_cov_244.249282_1
BioSample	SAMEA4765906
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.35
Jumbo phage	No

Genome content
Genome length	34,054 bps
GC content	45.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.13%
Average CDS length	645.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007562_1	PHROG	phrog_17180	NA	unknown function
UHGV-0007562_1	eggNOG-mapper	665950.HMPREF1025_01555	NA	NA
UHGV-0007562_1	Structural annotation	PF14282	NA	NA
UHGV-0007562_5	PHROG	phrog_18725	NA	unknown function
UHGV-0007562_5	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0007562_6	PHROG	phrog_13879	NA	unknown function
UHGV-0007562_6	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-0007562_6	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0007562_7	PHROG	phrog_1194	NA	unknown function
UHGV-0007562_7	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0007562_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0007562_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0007562_8	UniRef90	UniRef90_A0A1I1XW41	Phage-related protein	NA
UHGV-0007562_8	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-0007562_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0007562_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0007562_10	PHROG	phrog_8300	NA	unknown function
UHGV-0007562_10	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0007562_10	Structural annotation	PF06896	NA	NA
UHGV-0007562_11	PHROG	phrog_820	major tail protein	tail
UHGV-0007562_11	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0007562_11	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0007562_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0007562_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0007562_12	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-0007562_12	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0007562_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0007562_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0007562_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0007562_13	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0007562_14	PHROG	phrog_8710	NA	unknown function
UHGV-0007562_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0007562_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0007562_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0007562_15	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0007562_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0007562_16	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-0007562_16	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0007562_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0007562_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0007562_17	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0007562_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0007562_18	UniRef90	UniRef90_UPI00138AC1F0	minor capsid protein	NA
UHGV-0007562_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0007562_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0007562_18	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0007562_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0007562_18	Structural annotation	PF06152, PF01129, NF041404	NA	NA
UHGV-0007562_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0007562_19	UniRef90	UniRef90_UPI001F14233C	capsid protein	NA
UHGV-0007562_19	eggNOG-mapper	1282664.H354_06626	NA	NA
UHGV-0007562_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0007562_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0007562_20	UniRef90	UniRef90_A0A1M7MXD7	Phage terminase, large subunit, PBSX family	NA
UHGV-0007562_20	eggNOG-mapper	394503.Ccel_3050	Phage terminase, large subunit, PBSX family	NA
UHGV-0007562_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0007562_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0007562_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0007562_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0007562_21	UniRef90	UniRef90_A0A1M7MX16	Phage terminase small subunit	NA
UHGV-0007562_21	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0007562_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007562_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0007562_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0007562_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0007562_22	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0007562_22	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0007562_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0007562_22	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0007562_25	PHROG	phrog_20593	NA	unknown function
UHGV-0007562_26	PHROG	phrog_20593	NA	unknown function
UHGV-0007562_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0007562_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0007562_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0007562_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0007562_28	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-0007562_28	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0007562_29	UniRef90	UniRef90_UPI00110589E2	ASCH domain-containing protein	NA
UHGV-0007562_29	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0007562_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0007562_31	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-0007562_32	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0007562_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0007562_32	UniRef90	UniRef90_A0A6L5YHS5	Tyrosine-type recombinase/integrase	NA
UHGV-0007562_32	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0007562_32	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0007562_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0007562_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0007562_32	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0007562_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0007562_33	PHROG	phrog_5696	NA	unknown function
UHGV-0007562_33	UniRef90	UniRef90_A0A8E3SKS1	N-6 DNA methylase	NA
UHGV-0007562_33	eggNOG-mapper	500632.CLONEX_03432	N-6 DNA Methylase	NA
UHGV-0007562_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0007562_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0007562_33	Structural annotation	COG0286	NA	NA
UHGV-0007562_34	PHROG	phrog_7566	NA	unknown function
UHGV-0007562_34	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0007562_35	PHROG	phrog_15198	NA	unknown function
UHGV-0007562_35	UniRef90	UniRef90_A0A6L6XDH6	NA	NA
UHGV-0007562_35	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0007562_35	Pfam	PF04448	NA	DUF551
UHGV-0007562_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0007562_36	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0007562_36	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0007562_38	PHROG	phrog_15077	NA	unknown function
UHGV-0007562_38	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-0007562_38	eggNOG-mapper	1235793.C809_01908	NA	NA
UHGV-0007562_38	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0007562_39	PHROG	phrog_8470	NA	unknown function
UHGV-0007562_39	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0007562_39	eggNOG-mapper	610130.Closa_1108	PcfJ-like protein	NA
UHGV-0007562_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0007562_39	Structural annotation	PF14284	NA	NA
UHGV-0007562_40	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0007562_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0007562_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0007562_41	UniRef90	UniRef90_R6CVM1	RNase H type-1 domain-containing protein	NA
UHGV-0007562_41	eggNOG-mapper	1235793.C809_01903	RNase H	NA
UHGV-0007562_41	Pfam	PF00075	RNase H	RNase_H
UHGV-0007562_41	COG	COG0328	Ribonuclease HI	NA
UHGV-0007562_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0007562_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0007562_42	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0007562_42	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0007562_42	Structural annotation	PF01446	NA	NA
UHGV-0007562_45	Structural annotation	PF09035	NA	NA
UHGV-0007562_46	UniRef90	UniRef90_A0A416ZXQ1	NA	NA
UHGV-0007562_46	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0007562_46	Pfam	PF05339	NA	DUF739
UHGV-0007562_46	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0007562_46	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0007562_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0007562_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0007562_47	UniRef90	UniRef90_A0A1Y4RDC3	Repressor LexA	NA
UHGV-0007562_47	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0007562_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007562_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0007562_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0007562_47	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0007562_48	PHROG	phrog_1847	NA	unknown function
UHGV-0007562_48	UniRef90	UniRef90_A0A4V0Z837	T5orf172 domain-containing protein	NA
UHGV-0007562_48	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0007562_48	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0007562_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0007562_48	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0007562_49	KOfam	K14059	int; integrase	NA
UHGV-0007562_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0007562_49	UniRef90	UniRef90_R6C1N7	Site-specific recombinase XerD	NA
UHGV-0007562_49	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0007562_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0007562_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0007562_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0007562_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0007562_50	eggNOG-mapper	1408311.JNJM01000002_gene1138	NA	NA