UHGV-0007639

Genome information

Genome length 31,036 bps

CDS count 40

Completeness 75.49% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007639
vOTU ID	vOTU-033927
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_O_20_2642__NODE_209_length_127917_cov_7.074601_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.15
Jumbo phage	No

Genome content
Genome length	31,036 bps
GC content	43.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.98%
Average CDS length	742.20 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007639_4	PHROG	phrog_19011	NA	unknown function
UHGV-0007639_4	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0007639_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0007639_6	UniRef90	UniRef90_UPI001571211B	NA	NA
UHGV-0007639_6	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0007639_6	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0007639_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0007639_6	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0007639_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0007639_7	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0007639_7	UniRef90	UniRef90_UPI001D08595A	terminase small subunit	NA
UHGV-0007639_7	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0007639_7	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0007639_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007639_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0007639_7	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0007639_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0007639_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0007639_8	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-0007639_8	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0007639_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0007639_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0007639_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0007639_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0007639_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0007639_9	UniRef90	UniRef90_UPI001D0867C2	phage portal protein	NA
UHGV-0007639_9	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0007639_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0007639_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0007639_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0007639_10	UniRef90	UniRef90_UPI00156DA0DB	phage minor capsid protein	NA
UHGV-0007639_10	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0007639_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0007639_10	COG	COG2369	NA	NA
UHGV-0007639_10	Structural annotation	PF06152	NA	NA
UHGV-0007639_11	PHROG	phrog_15041	NA	unknown function
UHGV-0007639_11	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0007639_11	Structural annotation	PF10827	NA	NA
UHGV-0007639_12	PHROG	phrog_27009	NA	unknown function
UHGV-0007639_13	KOfam	K07584	NA	NA
UHGV-0007639_13	PHROG	phrog_4478	peptidase	other
UHGV-0007639_13	UniRef90	UniRef90_UPI00156D7F8B	ribosomal-processing cysteine protease Prp	NA
UHGV-0007639_13	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0007639_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0007639_13	COG	COG2868	NA	NA
UHGV-0007639_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0007639_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0007639_14	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0007639_14	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0007639_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0007639_15	UniRef90	UniRef90_UPI00157128C8	phage major capsid protein	NA
UHGV-0007639_15	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0007639_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0007639_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0007639_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0007639_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0007639_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0007639_16	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0007639_17	PHROG	phrog_3366	NA	unknown function
UHGV-0007639_17	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0007639_17	Pfam	PF20536	NA	DUF6751
UHGV-0007639_17	Structural annotation	PF20536	NA	NA
UHGV-0007639_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0007639_18	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-0007639_18	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0007639_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0007639_18	Structural annotation	PF11114	NA	NA
UHGV-0007639_19	PHROG	phrog_3266	tail completion	connector
UHGV-0007639_19	eggNOG-mapper	1235792.C808_05372	NA	NA
UHGV-0007639_19	Structural annotation	PF12691	NA	NA
UHGV-0007639_20	PHROG	phrog_3099	NA	unknown function
UHGV-0007639_20	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0007639_20	Structural annotation	PF08813, TIGR02126, COG3498	NA	NA
UHGV-0007639_22	PHROG	phrog_11299	NA	unknown function
UHGV-0007639_22	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0007639_22	Structural annotation	PF10666	NA	NA
UHGV-0007639_23	PHROG	phrog_706	NA	unknown function
UHGV-0007639_23	UniRef90	UniRef90_UPI00156F1927	Gp15 family bacteriophage protein	NA
UHGV-0007639_23	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0007639_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0007639_23	Structural annotation	PF06854	NA	NA
UHGV-0007639_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0007639_24	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-0007639_24	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0007639_24	COG	COG5412	Phage-related protein	NA
UHGV-0007639_25	PHROG	phrog_1194	NA	unknown function
UHGV-0007639_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0007639_26	PHROG	phrog_6616	tail protein	tail
UHGV-0007639_26	UniRef90	UniRef90_UPI00156E2BA6	collagen-like protein	NA
UHGV-0007639_26	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0007639_26	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0007639_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0007639_26	Structural annotation	PF05113, PF02010, NF033848, NF007392, COG3500	NA	NA
UHGV-0007639_27	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0007639_27	COG	COG4085	DNA/RNA endonuclease YhcR, contains UshA esterase domain	NA
UHGV-0007639_28	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0007639_28	PHROG	phrog_7158	NA	unknown function
UHGV-0007639_28	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0007639_28	eggNOG-mapper	1501230.ET33_05810	Calcineurin-like phosphoesterase	NA
UHGV-0007639_28	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0007639_28	Structural annotation	PF12850, PF10014, MF_00905, NF008359, COG5555	NA	NA
UHGV-0007639_29	PHROG	phrog_16164	NA	unknown function
UHGV-0007639_29	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0007639_30	PHROG	phrog_19280	NA	unknown function
UHGV-0007639_30	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0007639_30	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0007639_30	Pfam	PF19789	NA	DUF6273
UHGV-0007639_30	Structural annotation	PF19789	NA	NA
UHGV-0007639_31	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0007639_33	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0007639_33	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0007639_33	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0007639_33	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0007639_33	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0007639_33	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0007639_33	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0007639_33	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0007639_36	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0007639_37	PHROG	phrog_4105	NA	unknown function
UHGV-0007639_37	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0007639_38	PHROG	phrog_1129	holin	lysis
UHGV-0007639_38	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0007639_38	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0007639_38	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0007639_38	Structural annotation	PF16079	NA	NA
UHGV-0007639_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0007639_39	PHROG	phrog_3088	amidase	lysis
UHGV-0007639_39	UniRef90	UniRef90_A0A414EG98	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0007639_39	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0007639_39	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0007639_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0007639_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0007639_39	Structural annotation	PF01832, MF_04111, NF008758, TIGR02541, COG5632, COG1705	NA	NA