UHGV-0007712

Genome information

Genome length 35,545 bps

CDS count 62

Completeness 83.72% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007712
vOTU ID	vOTU-034700
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-I-L_M_5_2492__NODE_39_length_269919_cov_6.195070_1
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.66
Jumbo phage	No

Genome content
Genome length	35,545 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.17%
Average CDS length	514.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007712_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0007712_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0007712_1	UniRef90	UniRef90_UPI000951DCAF	helix-turn-helix domain-containing protein	NA
UHGV-0007712_1	eggNOG-mapper	395961.Cyan7425_2965	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0007712_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007712_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0007712_3	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0007712_3	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0007712_3	UniRef90	UniRef90_A0A7U9RUC2	HicB-like domain-containing protein	NA
UHGV-0007712_3	eggNOG-mapper	1235793.C809_01888	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0007712_3	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0007712_3	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0007712_3	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0007712_4	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0007712_4	UniRef90	UniRef90_A0A7X3MIX5	Addiction module toxin, HicA family	NA
UHGV-0007712_4	eggNOG-mapper	1235793.C809_01889	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0007712_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0007712_4	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0007712_4	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0007712_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0007712_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007712_6	UniRef90	UniRef90_UPI001E2D1F04	helix-turn-helix domain-containing protein	NA
UHGV-0007712_6	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0007712_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0007712_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0007712_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0007712_7	eggNOG-mapper	97139.C824_00061	NA	NA
UHGV-0007712_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0007712_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007712_8	UniRef90	UniRef90_UPI0018A9CBC8	helix-turn-helix domain-containing protein	NA
UHGV-0007712_8	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0007712_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0007712_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0007712_8	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0007712_10	Structural annotation	PF07875	NA	NA
UHGV-0007712_16	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0007712_16	PHROG	phrog_19890	NA	unknown function
UHGV-0007712_16	UniRef90	UniRef90_R9KUE7	SLT domain-containing protein	NA
UHGV-0007712_16	eggNOG-mapper	397290.C810_01448	lytic transglycosylase activity	NA
UHGV-0007712_16	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0007712_16	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0007712_16	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0007712_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0007712_19	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0007712_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0007712_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0007712_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0007712_20	UniRef90	UniRef90_A0A3R6KTE4	RNase H type-1 domain-containing protein	NA
UHGV-0007712_20	eggNOG-mapper	2325.TKV_c12790	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0007712_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0007712_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0007712_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0007712_21	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0007712_22	PHROG	phrog_8470	NA	unknown function
UHGV-0007712_22	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0007712_22	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0007712_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0007712_22	Structural annotation	PF14284	NA	NA
UHGV-0007712_23	PHROG	phrog_15077	NA	unknown function
UHGV-0007712_23	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0007712_23	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0007712_23	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0007712_24	PHROG	phrog_7566	NA	unknown function
UHGV-0007712_24	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0007712_26	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0007712_26	eggNOG-mapper	1235793.C809_01910	NA	NA
UHGV-0007712_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0007712_27	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0007712_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0007712_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0007712_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0007712_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0007712_28	PHROG	phrog_20593	NA	unknown function
UHGV-0007712_36	PHROG	phrog_33130	NA	unknown function
UHGV-0007712_36	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0007712_36	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0007712_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0007712_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0007712_38	UniRef90	UniRef90_UPI000E54849E	PBSX family phage terminase large subunit	NA
UHGV-0007712_38	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0007712_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007712_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0007712_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0007712_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0007712_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0007712_38	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0007712_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0007712_39	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0007712_39	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0007712_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0007712_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0007712_40	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0007712_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0007712_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0007712_40	Structural annotation	PF11114	NA	NA
UHGV-0007712_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0007712_41	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0007712_41	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0007712_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0007712_41	COG	COG2369	NA	NA
UHGV-0007712_41	Structural annotation	PF06152	NA	NA
UHGV-0007712_42	Structural annotation	PF16244	NA	NA
UHGV-0007712_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0007712_43	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0007712_43	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0007712_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0007712_44	PHROG	phrog_283	major head protein	head and packaging
UHGV-0007712_44	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0007712_44	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0007712_44	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0007712_44	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0007712_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0007712_45	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0007712_46	PHROG	phrog_3366	NA	unknown function
UHGV-0007712_46	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0007712_46	Pfam	PF20536	NA	DUF6751
UHGV-0007712_46	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0007712_47	PHROG	phrog_3266	tail completion	connector
UHGV-0007712_47	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0007712_47	Structural annotation	PF12691	NA	NA
UHGV-0007712_48	PHROG	phrog_3099	NA	unknown function
UHGV-0007712_48	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0007712_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0007712_49	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0007712_49	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0007712_49	Structural annotation	PF10666	NA	NA
UHGV-0007712_50	PHROG	phrog_706	NA	unknown function
UHGV-0007712_50	UniRef90	UniRef90_UPI000E4C3E72	Gp15 family bacteriophage protein	NA
UHGV-0007712_50	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0007712_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0007712_50	Structural annotation	PF06854	NA	NA
UHGV-0007712_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0007712_51	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0007712_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0007712_52	PHROG	phrog_1194	NA	unknown function
UHGV-0007712_52	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0007712_52	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0007712_53	PHROG	phrog_13879	NA	unknown function
UHGV-0007712_53	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0007712_53	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0007712_55	PHROG	phrog_18725	NA	unknown function
UHGV-0007712_55	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0007712_57	PHROG	phrog_689	holin	lysis
UHGV-0007712_57	UniRef90	UniRef90_UPI00143B27EE	hemolysin XhlA family protein	NA
UHGV-0007712_57	eggNOG-mapper	1230342.CTM_14513	Haemolysin XhlA	NA
UHGV-0007712_58	PHROG	phrog_443	holin	lysis
UHGV-0007712_58	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0007712_58	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0007712_58	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0007712_58	Structural annotation	PF16945	NA	NA
UHGV-0007712_59	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0007712_59	PHROG	phrog_3088	amidase	lysis
UHGV-0007712_59	UniRef90	UniRef90_A0A7G9G8L8	Amidase	NA
UHGV-0007712_59	eggNOG-mapper	1235790.C805_00615	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0007712_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0007712_59	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0007712_59	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0007712_60	UniRef90	UniRef90_A0A4Q5C4H0	Protein phosphatase	NA
UHGV-0007712_60	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-0007712_60	AcrCatalog	cluster_13845	NA	NA
UHGV-0007712_61	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0007712_61	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0007712_61	eggNOG-mapper	1235792.C808_03051	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0007712_61	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0007712_61	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0007712_61	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0007712_61	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0007712_62	PHROG	phrog_3291	NA	unknown function
UHGV-0007712_62	eggNOG-mapper	457570.Nther_0820	NA	NA