UHGV-0007826

Genome information

vOTU vOTU-062082

Genome length 46,713 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9627

Prediction confidence Confident

Genome information
Genome ID	UHGV-0007826
vOTU ID	vOTU-062082
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-E-H_H_1_1976__NODE_5_length_384960_cov_13.116557_1
BioSample	SAMEA4766137
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9627
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.41
Jumbo phage	No

Genome content
Genome length	46,713 bps
GC content	42.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.11%
Average CDS length	627.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0007826_2	KOfam	K14059	int; integrase	NA
UHGV-0007826_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0007826_2	UniRef90	UniRef90_A0A0D1JHY9	XerC_2 protein	NA
UHGV-0007826_2	eggNOG-mapper	1127131.WEISSC39_10385	Belongs to the 'phage' integrase family	NA
UHGV-0007826_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0007826_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0007826_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0007826_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0007826_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0007826_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0007826_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0007826_3	UniRef90	UniRef90_A0A1X0VBR9	BRCT domain-containing protein	NA
UHGV-0007826_3	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0007826_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0007826_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0007826_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0007826_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0007826_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0007826_4	eggNOG-mapper	913848.AELK01000066_gene1235	LysM domain	NA
UHGV-0007826_4	COG	COG1388	LysM repeat	NA
UHGV-0007826_5	PHROG	phrog_9505	NA	unknown function
UHGV-0007826_6	PHROG	phrog_87	metallo-protease	other
UHGV-0007826_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0007826_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0007826_7	UniRef90	UniRef90_A0A6C2C755	XRE family transcriptional regulator	NA
UHGV-0007826_7	eggNOG-mapper	1329250.WOSG25_180180	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators	NA
UHGV-0007826_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0007826_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0007826_7	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0007826_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0007826_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0007826_9	UniRef90	UniRef90_A0A069CVN3	Phage-related antirepressor	NA
UHGV-0007826_9	eggNOG-mapper	1329250.WOSG25_170130	AntA/AntB antirepressor	NA
UHGV-0007826_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0007826_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0007826_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0007826_9	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0007826_17	PHROG	phrog_4729	NA	unknown function
UHGV-0007826_17	UniRef90	UniRef90_D5T4I4	Prophage pi3 protein 50	NA
UHGV-0007826_17	eggNOG-mapper	762051.LKI_09580	NA	NA
UHGV-0007826_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0007826_18	UniRef90	UniRef90_A0A8G0M6L2	ERF family protein	NA
UHGV-0007826_18	eggNOG-mapper	762550.LEGAS_1605	ERF superfamily	NA
UHGV-0007826_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0007826_18	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0007826_19	PHROG	phrog_398	NA	unknown function
UHGV-0007826_19	UniRef90	UniRef90_A0A5E8F7X1	HNHc domain-containing protein	NA
UHGV-0007826_19	eggNOG-mapper	1127131.WEISSC39_10475	Putative HNHc nuclease	NA
UHGV-0007826_19	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0007826_19	Structural annotation	PF16784	NA	NA
UHGV-0007826_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0007826_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0007826_20	UniRef90	UniRef90_UPI001196ECF3	single-stranded DNA-binding protein	NA
UHGV-0007826_20	eggNOG-mapper	911104.AEKT01000054_gene206	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0007826_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0007826_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0007826_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0007826_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0007826_20	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0007826_21	UniRef90	UniRef90_A0A1C4C0Y9	Helix-turn-helix domain-containing protein	NA
UHGV-0007826_21	eggNOG-mapper	1329250.WOSG25_210040	Replication initiation and membrane attachment	NA
UHGV-0007826_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0007826_21	Structural annotation	PF03428, MF_01177, TIGR04176, COG3355	NA	NA
UHGV-0007826_22	UniRef90	UniRef90_C5RA87	DnaD domain protein	NA
UHGV-0007826_24	UniRef90	UniRef90_UPI00114D8CA3	NA	NA
UHGV-0007826_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0007826_30	UniRef90	UniRef90_UPI0013DC2E72	ArpU family transcriptional regulator	NA
UHGV-0007826_30	eggNOG-mapper	46256.BBIK01000005_gene1045	Transcriptional regulator, ArpU family	NA
UHGV-0007826_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0007826_30	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0007826_31	PHROG	phrog_9243	NA	unknown function
UHGV-0007826_31	UniRef90	UniRef90_UPI0012E4DCDE	NA	NA
UHGV-0007826_31	Pfam	PF12686	NA	DUF3800
UHGV-0007826_31	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0007826_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0007826_35	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0007826_35	UniRef90	UniRef90_UPI001E3460D8	terminase small subunit	NA
UHGV-0007826_35	eggNOG-mapper	1127131.WEISSC39_07840	DNA packaging	NA
UHGV-0007826_35	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0007826_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0007826_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0007826_35	Structural annotation	PF06056, NF040601	NA	NA
UHGV-0007826_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0007826_36	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0007826_36	UniRef90	UniRef90_A0A5E8F9B6	Terminase large subunit	NA
UHGV-0007826_36	eggNOG-mapper	1127131.WEISSC39_07835	Terminase-like family	NA
UHGV-0007826_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0007826_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0007826_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0007826_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0007826_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0007826_37	UniRef90	UniRef90_A0A139QKT3	Portal protein, phage associated	NA
UHGV-0007826_37	eggNOG-mapper	1127131.WEISSC39_07830	Phage portal protein	NA
UHGV-0007826_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0007826_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0007826_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0007826_39	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0007826_39	UniRef90	UniRef90_A0A5E8F7S0	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0007826_39	eggNOG-mapper	46256.BBIK01000005_gene1036	NA	NA
UHGV-0007826_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0007826_41	UniRef90	UniRef90_A0A139QKH9	Phage capsid and scaffold	NA
UHGV-0007826_41	eggNOG-mapper	1127131.WEISSC39_07810	NA	NA
UHGV-0007826_41	Pfam	PF14265	NA	DUF4355
UHGV-0007826_42	PHROG	phrog_909	major head protein	head and packaging
UHGV-0007826_42	UniRef90	UniRef90_R7FKI7	NA	NA
UHGV-0007826_42	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0007826_43	PHROG	phrog_29	major head protein	head and packaging
UHGV-0007826_43	UniRef90	UniRef90_A0A5E8F6F7	NA	NA
UHGV-0007826_43	eggNOG-mapper	1127131.WEISSC39_07800	Phage major capsid protein E	NA
UHGV-0007826_43	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0007826_43	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0007826_44	KOfam	K19223	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	NA
UHGV-0007826_44	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0007826_44	UniRef90	UniRef90_A0A5E8F8H1	Endopeptidase LytF	NA
UHGV-0007826_44	eggNOG-mapper	1051501.AYTL01000027_gene484	COG1388 FOG LysM repeat	NA
UHGV-0007826_44	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0007826_44	Pfam	PF01476	LysM domain	LysM
UHGV-0007826_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0007826_45	eggNOG-mapper	1235801.C822_00146	NA	NA
UHGV-0007826_45	Pfam	PF13262	NA	DUF4054
UHGV-0007826_46	PHROG	phrog_222	tail protein	tail
UHGV-0007826_46	UniRef90	UniRef90_A0A1L6R939	Phage-related protein	NA
UHGV-0007826_46	eggNOG-mapper	1127131.WEISSC39_07785	NA	NA
UHGV-0007826_47	PHROG	phrog_1661	NA	unknown function
UHGV-0007826_47	eggNOG-mapper	1545701.LACWKB10_1187	NA	NA
UHGV-0007826_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0007826_48	PHROG	phrog_1232	NA	unknown function
UHGV-0007826_48	UniRef90	UniRef90_A0A139QKF3	NA	NA
UHGV-0007826_48	eggNOG-mapper	1127131.WEISSC39_07775	NA	NA
UHGV-0007826_49	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0007826_49	UniRef90	UniRef90_A0A6G8AZ06	NA	NA
UHGV-0007826_49	eggNOG-mapper	1127131.WEISSC39_07770	NA	NA
UHGV-0007826_49	Pfam	PF11863	NA	DUF3383
UHGV-0007826_49	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0007826_50	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0007826_50	UniRef90	UniRef90_A0A2A6E3K8	NA	NA
UHGV-0007826_50	eggNOG-mapper	1127131.WEISSC39_07765	NA	NA
UHGV-0007826_50	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0007826_51	PHROG	phrog_1778	NA	unknown function
UHGV-0007826_51	UniRef90	UniRef90_A0A1L6R8Z6	NA	NA
UHGV-0007826_51	eggNOG-mapper	1127131.WEISSC39_07760	NA	NA
UHGV-0007826_52	PHROG	phrog_1995	NA	unknown function
UHGV-0007826_53	PHROG	phrog_37622	NA	unknown function
UHGV-0007826_53	UniRef90	UniRef90_UPI0016817087	tape measure protein	NA
UHGV-0007826_53	eggNOG-mapper	1127131.WEISSC39_07750	NA	NA
UHGV-0007826_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0007826_54	PHROG	phrog_1517	endolysin	lysis
UHGV-0007826_54	UniRef90	UniRef90_A0A2S1KRG3	LysM domain-containing protein	NA
UHGV-0007826_54	eggNOG-mapper	46256.BBIK01000005_gene1021	LysM domain	NA
UHGV-0007826_54	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0007826_54	Pfam	PF01476	LysM domain	LysM
UHGV-0007826_54	COG	COG1388	LysM repeat	NA
UHGV-0007826_54	Structural annotation	PF19512, PF01476, TIGR02899, TIGR01633, COG1388, COG4718	NA	NA
UHGV-0007826_55	PHROG	phrog_1264	NA	unknown function
UHGV-0007826_55	eggNOG-mapper	46256.BBIK01000005_gene1020	NA	NA
UHGV-0007826_56	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0007826_56	PHROG	phrog_17955	esterase/lipase	other
UHGV-0007826_56	UniRef90	UniRef90_A0A2S1KRM5	SGNH/GDSL hydrolase family protein	NA
UHGV-0007826_56	eggNOG-mapper	46256.BBIK01000005_gene1019	NA	NA
UHGV-0007826_56	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0007826_57	UniRef90	UniRef90_A0A5B8TRZ6	ABC transporter substrate-binding protein	NA
UHGV-0007826_57	eggNOG-mapper	1127131.WEISSC39_07730	NA	NA
UHGV-0007826_57	Structural annotation	PF18352, MF_00403_A, NF008190, COG5569	NA	NA
UHGV-0007826_58	KOfam	K06903	NA	NA
UHGV-0007826_58	PHROG	phrog_120	baseplate protein	tail
UHGV-0007826_58	UniRef90	UniRef90_A0A139QKF2	GPW_gp25 domain-containing protein	NA
UHGV-0007826_58	eggNOG-mapper	1127131.WEISSC39_07725	NA	NA
UHGV-0007826_58	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0007826_58	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0007826_59	PHROG	phrog_6	baseplate protein	tail
UHGV-0007826_59	UniRef90	UniRef90_A0A1L6R931	Putative bacteriophage protein	NA
UHGV-0007826_59	eggNOG-mapper	46256.BBIK01000005_gene1016	homolog of phage Mu protein gp47	NA
UHGV-0007826_59	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0007826_59	COG	COG3299	NA	NA
UHGV-0007826_59	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0007826_60	PHROG	phrog_1160	baseplate protein	tail
UHGV-0007826_60	eggNOG-mapper	46256.BBIK01000005_gene1015	NA	NA
UHGV-0007826_61	PHROG	phrog_7911	tail protein	tail
UHGV-0007826_61	UniRef90	UniRef90_UPI0018F13FAC	pyocin knob domain-containing protein	NA
UHGV-0007826_61	eggNOG-mapper	1127131.WEISSC39_07710	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0007826_61	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0007826_62	PHROG	phrog_199	holin	lysis
UHGV-0007826_62	UniRef90	UniRef90_UPI00111109A4	phage holin family protein	NA
UHGV-0007826_62	eggNOG-mapper	1321820.HMPREF1983_00917	toxin secretion phage lysis holin	NA
UHGV-0007826_62	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0007826_62	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0007826_62	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0007826_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0007826_63	PHROG	phrog_291	endolysin	lysis
UHGV-0007826_63	UniRef90	UniRef90_A0A0D1LSZ1	Lyc protein	NA
UHGV-0007826_63	eggNOG-mapper	46256.BBIK01000004_gene708	Target recognition domain of lytic exoenzyme	NA
UHGV-0007826_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0007826_63	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0007826_66	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0007826_66	UniRef90	UniRef90_UPI001C1F79BD	helix-turn-helix domain-containing protein	NA
UHGV-0007826_66	eggNOG-mapper	1114972.AUAW01000025_gene784	NA	NA
UHGV-0007826_66	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0007826_66	Structural annotation	PF20038, NF040990, COG3311	NA	NA
UHGV-0007826_68	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0007826_68	UniRef90	UniRef90_UPI001C1F798E	NA	NA
UHGV-0007826_68	eggNOG-mapper	1235801.C822_00135	NA	NA
UHGV-0007826_68	Pfam	PF10097	NA	DUF2335
UHGV-0007826_68	COG	COG5346	NA	NA
UHGV-0007826_69	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0007826_69	PHROG	phrog_25773	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0007826_69	UniRef90	UniRef90_A0A2S1KRH0	DnaB_2 domain-containing protein	NA
UHGV-0007826_69	eggNOG-mapper	911104.AEKT01000048_gene942	DNA replication protein DnaD	NA
UHGV-0007826_69	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0007826_69	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0007826_69	COG	COG3935	DNA replication protein DnaD	NA