UHGV-0008197

Genome information

Genome length 31,333 bps

CDS count 56

Completeness 84.86% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0008197
vOTU ID	vOTU-022519
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_C-REDO_E_12_1563__NODE_1477_length_31333_cov_57.817603
BioSample	NA
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.35
Jumbo phage	No

Genome content
Genome length	31,333 bps
GC content	59.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.76%
Average CDS length	521.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0008197_1	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0008197_1	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0008197_1	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0008197_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0008197_6	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-0008197_8	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0008197_8	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0008197_8	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0008197_8	Pfam	PF06356	NA	DUF1064
UHGV-0008197_8	Structural annotation	PF06356	NA	NA
UHGV-0008197_10	PHROG	phrog_22543	NA	unknown function
UHGV-0008197_10	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0008197_13	Structural annotation	PF05082	NA	NA
UHGV-0008197_14	Structural annotation	NF041247	NA	NA
UHGV-0008197_16	Structural annotation	PF10548	NA	NA
UHGV-0008197_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0008197_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0008197_19	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0008197_19	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0008197_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0008197_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0008197_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0008197_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0008197_21	eggNOG-mapper	585394.RHOM_06430	Competence protein ComEC	NA
UHGV-0008197_21	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0008197_21	Structural annotation	PF02805	NA	NA
UHGV-0008197_22	PHROG	phrog_10292	NA	unknown function
UHGV-0008197_22	UniRef90	UniRef90_A0A416W984	TM2 domain-containing protein	NA
UHGV-0008197_22	eggNOG-mapper	1033810.HLPCO_001631	TM2 domain	NA
UHGV-0008197_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0008197_22	Pfam	PF05154	TM2 domain	TM2
UHGV-0008197_22	COG	COG2314	NA	NA
UHGV-0008197_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0008197_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0008197_23	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0008197_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0008197_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0008197_24	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0008197_24	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0008197_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0008197_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-0008197_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0008197_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0008197_24	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0008197_25	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0008197_25	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0008197_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0008197_27	PHROG	phrog_16490	NA	unknown function
UHGV-0008197_27	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0008197_29	Structural annotation	PF16509, MF_00245, NF008895, COG2739	NA	NA
UHGV-0008197_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0008197_30	PHROG	phrog_1794	amidase	lysis
UHGV-0008197_30	UniRef90	UniRef90_N1ZHY5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0008197_30	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-0008197_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0008197_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0008197_30	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0008197_31	PHROG	phrog_443	holin	lysis
UHGV-0008197_31	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-0008197_31	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0008197_31	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0008197_31	Structural annotation	PF16945	NA	NA
UHGV-0008197_32	PHROG	phrog_937	hemolysin	other
UHGV-0008197_32	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0008197_34	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0008197_34	Structural annotation	PF10618	NA	NA
UHGV-0008197_36	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0008197_36	UniRef90	UniRef90_UPI000834AF98	NA	NA
UHGV-0008197_36	eggNOG-mapper	742738.HMPREF9460_02534	NA	NA
UHGV-0008197_36	Pfam	PF19789	NA	DUF6273
UHGV-0008197_36	Structural annotation	PF19789	NA	NA
UHGV-0008197_37	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0008197_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0008197_38	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0008197_39	PHROG	phrog_10898	NA	unknown function
UHGV-0008197_39	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0008197_39	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0008197_39	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0008197_39	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0008197_41	Structural annotation	PF10651	NA	NA
UHGV-0008197_42	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0008197_43	PHROG	phrog_26795	NA	unknown function
UHGV-0008197_43	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0008197_43	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0008197_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0008197_44	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0008197_44	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0008197_44	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0008197_44	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0008197_45	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0008197_45	eggNOG-mapper	203119.Cthe_1618	tail tape measure protein, TP901	NA
UHGV-0008197_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0008197_45	Structural annotation	TIGR01760, NF033928	NA	NA
UHGV-0008197_47	Structural annotation	PF11836	NA	NA
UHGV-0008197_48	PHROG	phrog_88	major tail protein	tail
UHGV-0008197_48	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0008197_48	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0008197_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0008197_48	COG	COG5492	NA	NA
UHGV-0008197_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0008197_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0008197_49	Structural annotation	TIGR01725	NA	NA
UHGV-0008197_50	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0008197_50	Structural annotation	PF05657	NA	NA
UHGV-0008197_51	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0008197_51	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0008197_51	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0008197_51	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0008197_51	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0008197_51	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0008197_51	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0008197_52	PHROG	phrog_5223	neck protein	connector
UHGV-0008197_52	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0008197_52	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0008197_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0008197_53	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0008197_53	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0008197_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0008197_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0008197_53	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0008197_53	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0008197_54	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0008197_54	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0008197_54	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0008197_54	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0008197_54	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0008197_54	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0008197_54	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0008197_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0008197_55	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0008197_55	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0008197_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0008197_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0008197_55	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0008197_56	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0008197_56	UniRef90	UniRef90_UPI001C2D2633	terminase large subunit	NA
UHGV-0008197_56	eggNOG-mapper	1444310.JANV01000004_gene2684	Terminase	NA
UHGV-0008197_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0008197_56	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0008197_56	Structural annotation	PF20441	NA	NA