UHGV-0008469

Genome information

Genome length 40,798 bps

CDS count 73

Completeness 90.80% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0008469
vOTU ID	vOTU-067286
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_21_RAJ1012YZ__NODE_435_length_67911_cov_49.111375_1
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.58
Jumbo phage	No

Genome content
Genome length	40,798 bps
GC content	33.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.54%
Average CDS length	509.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0008469_2	PHROG	phrog_443	holin	lysis
UHGV-0008469_2	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0008469_2	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0008469_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0008469_2	Structural annotation	PF16945	NA	NA
UHGV-0008469_4	PHROG	phrog_20016	NA	unknown function
UHGV-0008469_4	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0008469_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0008469_4	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0008469_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0008469_5	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0008469_5	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0008469_10	UniRef90	UniRef90_A0A355TLY9	SGNH_hydro domain-containing protein	NA
UHGV-0008469_10	Pfam	PF20674	Prealbumin-like fold domain	SpaA_3
UHGV-0008469_10	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0008469_10	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0008469_11	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0008469_12	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0008469_13	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0008469_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0008469_14	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0008469_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0008469_14	COG	COG4926	Phage-related protein	NA
UHGV-0008469_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0008469_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0008469_15	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0008469_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0008469_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0008469_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0008469_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0008469_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0008469_16	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0008469_16	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0008469_16	eggNOG-mapper	1123299.AUKZ01000018_gene181	Phage-related minor tail protein	NA
UHGV-0008469_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0008469_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0008469_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0008469_16	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0008469_17	PHROG	phrog_3033	NA	unknown function
UHGV-0008469_18	Structural annotation	PF11836	NA	NA
UHGV-0008469_19	PHROG	phrog_88	major tail protein	tail
UHGV-0008469_19	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0008469_19	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0008469_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0008469_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0008469_20	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0008469_20	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0008469_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0008469_21	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0008469_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0008469_22	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0008469_22	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0008469_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0008469_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0008469_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0008469_23	PHROG	phrog_5223	neck protein	connector
UHGV-0008469_23	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0008469_23	Structural annotation	TIGR01560	NA	NA
UHGV-0008469_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0008469_24	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0008469_24	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0008469_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0008469_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0008469_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0008469_24	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0008469_25	KOfam	K06904	NA	NA
UHGV-0008469_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0008469_25	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0008469_25	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0008469_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0008469_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0008469_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0008469_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0008469_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0008469_26	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0008469_26	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0008469_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0008469_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0008469_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0008469_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0008469_27	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0008469_27	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0008469_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0008469_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0008469_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0008469_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0008469_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0008469_28	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0008469_28	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0008469_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0008469_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0008469_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0008469_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0008469_29	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0008469_29	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0008469_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0008469_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0008469_30	UniRef90	UniRef90_A0A806LDM6	HTH cro/C1-type domain-containing protein	NA
UHGV-0008469_30	eggNOG-mapper	1145276.T479_01760	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0008469_30	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0008469_38	PHROG	phrog_4525	NA	unknown function
UHGV-0008469_39	PHROG	phrog_2316	NA	unknown function
UHGV-0008469_39	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0008469_39	eggNOG-mapper	1007103.AFHW01000207_gene1752	NA	NA
UHGV-0008469_39	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0008469_40	Structural annotation	PF10879	NA	NA
UHGV-0008469_42	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0008469_42	Pfam	PF07374	NA	DUF1492
UHGV-0008469_42	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0008469_46	Structural annotation	PF11061	NA	NA
UHGV-0008469_50	PHROG	phrog_15198	NA	unknown function
UHGV-0008469_50	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0008469_51	Structural annotation	PF16789	NA	NA
UHGV-0008469_52	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0008469_52	UniRef90	UniRef90_A0A374RH39	HNH endonuclease	NA
UHGV-0008469_52	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0008469_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0008469_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0008469_52	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0008469_54	PHROG	phrog_7711	NA	unknown function
UHGV-0008469_54	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0008469_54	eggNOG-mapper	189425.PGRAT_24145	NA	NA
UHGV-0008469_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0008469_54	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0008469_57	Structural annotation	PF19801	NA	NA
UHGV-0008469_58	PHROG	phrog_4601	NA	unknown function
UHGV-0008469_58	Structural annotation	PF17888	NA	NA
UHGV-0008469_59	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0008469_59	UniRef90	UniRef90_UPI001D0A0924	dUTP diphosphatase	NA
UHGV-0008469_59	eggNOG-mapper	262543.Exig_2187	Protein conserved in bacteria	NA
UHGV-0008469_59	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0008469_59	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0008469_59	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0008469_62	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0008469_62	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0008469_62	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0008469_62	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0008469_62	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0008469_62	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0008469_62	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0008469_63	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0008469_63	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0008469_63	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0008469_63	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0008469_63	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0008469_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0008469_63	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0008469_65	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0008469_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0008469_65	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0008469_65	eggNOG-mapper	999413.HMPREF1094_02021	Phage integrase family	NA
UHGV-0008469_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0008469_65	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0008469_65	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0008469_68	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0008469_71	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-0008469_71	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0008469_71	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0008469_73	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0008469_73	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0008469_73	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-0008469_73	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0008469_73	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0008469_73	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0008469_73	Structural annotation	PF01381, NF041951, COG2944	NA	NA