UHGV-0009389

Genome information

vOTU vOTU-020012

Genome length 37,402 bps

CDS count 42

Completeness 71.47% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0009389
vOTU ID	vOTU-020012
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076JZ__NODE_254_length_131715_cov_8.446209_1
BioSample	NA
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.72
Jumbo phage	No

Genome content
Genome length	37,402 bps
GC content	55.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.54%
Average CDS length	825.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0009389_2	KOfam	K02405	fliA, whiG; RNA polymerase sigma factor FliA	NA
UHGV-0009389_2	PHROG	phrog_11138	NA	unknown function
UHGV-0009389_2	UniRef90	UniRef90_A0A7U9RJZ3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0009389_2	eggNOG-mapper	1286171.EAL2_c05160	Sigma-70, region 4	NA
UHGV-0009389_2	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0009389_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0009389_2	Structural annotation	PF08281, MF_00245, NF009186, COG1595	NA	NA
UHGV-0009389_3	PHROG	phrog_7234	NA	unknown function
UHGV-0009389_3	eggNOG-mapper	935837.JAEK01000027_gene1669	NA	NA
UHGV-0009389_4	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0009389_4	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0009389_4	UniRef90	UniRef90_A0A316RBE8	ATP-dependent helicase	NA
UHGV-0009389_4	eggNOG-mapper	1121334.KB911068_gene2268	helicase	NA
UHGV-0009389_4	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0009389_4	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0009389_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0009389_4	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0009389_4	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0009389_5	PHROG	phrog_2378	NA	unknown function
UHGV-0009389_5	UniRef90	UniRef90_A0A0E4GE38	STAT transcription factor, coiled coil	NA
UHGV-0009389_5	eggNOG-mapper	411473.RUMCAL_00502	NA	NA
UHGV-0009389_6	PHROG	phrog_23155	NA	unknown function
UHGV-0009389_6	eggNOG-mapper	411473.RUMCAL_00501	NA	NA
UHGV-0009389_6	Structural annotation	PF18897	NA	NA
UHGV-0009389_7	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0009389_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0009389_7	UniRef90	UniRef90_E6MKA8	DNA polymerase I	NA
UHGV-0009389_7	eggNOG-mapper	887929.HMP0721_2444	3'-5' exonuclease	NA
UHGV-0009389_7	PADLOC	drt-cluster58	DRT	DRT
UHGV-0009389_7	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0009389_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0009389_7	NCBIFam	NF011541.0	bifunctional 3'-5' exonuclease/DNA polymerase	NA
UHGV-0009389_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0009389_7	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0009389_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0009389_8	UniRef90	UniRef90_UPI00189ADF7A	NA	NA
UHGV-0009389_8	eggNOG-mapper	1235790.C805_00849	NA	NA
UHGV-0009389_8	Pfam	PF14359	NA	DUF4406
UHGV-0009389_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0009389_9	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0009389_9	UniRef90	UniRef90_G8LZB6	Bifunctional DNA primase/polymerase famiily protein	NA
UHGV-0009389_9	eggNOG-mapper	1286171.EAL2_c05230	DNA primase activity	NA
UHGV-0009389_9	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0009389_9	Structural annotation	PF06048, PF09250, MF_00016, NF040949, COG4983, COG5519	NA	NA
UHGV-0009389_10	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0009389_10	UniRef90	UniRef90_A0A316RDE8	VRR-NUC domain-containing protein	NA
UHGV-0009389_10	eggNOG-mapper	1121334.KB911068_gene2274	pfam vrr-nuc	NA
UHGV-0009389_10	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0009389_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0009389_11	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0009389_11	eggNOG-mapper	1121342.AUCO01000004_gene628	sigma factor activity	NA
UHGV-0009389_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0009389_11	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0009389_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0009389_12	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0009389_12	UniRef90	UniRef90_R7ELH0	HNH endonuclease domain protein	NA
UHGV-0009389_12	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-0009389_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0009389_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0009389_12	Structural annotation	PF01844	NA	NA
UHGV-0009389_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0009389_13	UniRef90	UniRef90_A0A410PTU8	Terminase	NA
UHGV-0009389_13	eggNOG-mapper	1410624.JNKK01000017_gene1965	NA	NA
UHGV-0009389_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0009389_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0009389_14	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0009389_14	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0009389_14	UniRef90	UniRef90_R7ELG5	Methyltransferase	NA
UHGV-0009389_14	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-0009389_14	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0009389_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0009389_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0009389_14	COG	COG0863	DNA modification methylase	NA
UHGV-0009389_14	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0009389_15	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0009389_15	UniRef90	UniRef90_UPI0007744789	amidoligase family protein	NA
UHGV-0009389_15	eggNOG-mapper	1235799.C818_01024	Putative amidoligase enzyme	NA
UHGV-0009389_15	AcrCatalog	cluster_58247	NA	NA
UHGV-0009389_15	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0009389_15	Structural annotation	PF12224	NA	NA
UHGV-0009389_16	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0009389_16	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0009389_16	UniRef90	UniRef90_A0A1Y4SAU7	Gamma-glutamylcyclotransferase	NA
UHGV-0009389_16	eggNOG-mapper	1410670.JHXF01000015_gene2284	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0009389_16	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0009389_16	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0009389_16	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0009389_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0009389_17	UniRef90	UniRef90_A0A416R4G0	Terminase large subunit	NA
UHGV-0009389_17	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-0009389_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0009389_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0009389_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0009389_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0009389_18	KOfam	K07133	NA	NA
UHGV-0009389_18	UniRef90	UniRef90_A0A416MJ81	ATP-binding protein	NA
UHGV-0009389_18	eggNOG-mapper	1235796.C815_01902	NA	NA
UHGV-0009389_18	Pfam	PF13173	AAA domain	AAA_14
UHGV-0009389_18	Pfam	PF13635	NA	DUF4143
UHGV-0009389_18	COG	COG1373	Predicted ATPase, AAA+ superfamily	NA
UHGV-0009389_18	Structural annotation	PF13635, PF13173, MF_01158, NF001626, COG1373	NA	NA
UHGV-0009389_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0009389_19	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-0009389_19	eggNOG-mapper	1216932.CM240_0618	Phage portal protein, HK97 family	NA
UHGV-0009389_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0009389_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0009389_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0009389_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0009389_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0009389_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0009389_20	UniRef90	UniRef90_A0A1Q6KLQ0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0009389_20	eggNOG-mapper	552396.HMPREF0863_01435	Belongs to the peptidase S14 family	NA
UHGV-0009389_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0009389_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0009389_20	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0009389_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0009389_21	UniRef90	UniRef90_A0A316QWM8	Phage major capsid protein	NA
UHGV-0009389_21	eggNOG-mapper	1121334.KB911068_gene2291	Phage major capsid protein, HK97 family	NA
UHGV-0009389_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0009389_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0009389_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0009389_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0009389_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0009389_22	UniRef90	UniRef90_UPI000C869152	head-tail connector protein	NA
UHGV-0009389_22	eggNOG-mapper	1347392.CCEZ01000015_gene2836	Phage gp6-like head-tail connector protein	NA
UHGV-0009389_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0009389_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0009389_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0009389_23	UniRef90	UniRef90_UPI001896F942	phage head closure protein	NA
UHGV-0009389_23	eggNOG-mapper	293826.Amet_4025	head-tail	NA
UHGV-0009389_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0009389_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0009389_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0009389_24	UniRef90	UniRef90_A0A2A6ZP29	AbrB family transcriptional regulator	NA
UHGV-0009389_24	eggNOG-mapper	645991.Sgly_1529	Transcriptional regulator, AbrB family	NA
UHGV-0009389_24	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0009389_24	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0009389_24	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0009389_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0009389_25	UniRef90	UniRef90_R6C4B6	Phage protein HK97 gp10 family	NA
UHGV-0009389_25	eggNOG-mapper	580327.Tthe_0796	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0009389_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0009389_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0009389_25	Structural annotation	TIGR01725	NA	NA
UHGV-0009389_26	PHROG	phrog_78	tail terminator	connector
UHGV-0009389_26	eggNOG-mapper	1121334.KB911068_gene2295	NA	NA
UHGV-0009389_26	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0009389_27	PHROG	phrog_88	major tail protein	tail
UHGV-0009389_27	UniRef90	UniRef90_A0A1E3C2W6	Phage tail protein	NA
UHGV-0009389_27	eggNOG-mapper	573061.Clocel_3970	phage major tail protein, phi13 family	NA
UHGV-0009389_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0009389_27	COG	COG5492	NA	NA
UHGV-0009389_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0009389_28	PHROG	phrog_2115	tail protein	tail
UHGV-0009389_28	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-0009389_28	eggNOG-mapper	1347392.CCEZ01000015_gene2831	NA	NA
UHGV-0009389_28	Structural annotation	PF11836	NA	NA
UHGV-0009389_29	KOfam	K07133	NA	NA
UHGV-0009389_29	UniRef90	UniRef90_UPI001C118447	ATP-binding protein	NA
UHGV-0009389_29	eggNOG-mapper	626523.GCWU000342_02116	NA	NA
UHGV-0009389_29	Pfam	PF13173	AAA domain	AAA_14
UHGV-0009389_29	Pfam	PF13635	NA	DUF4143
UHGV-0009389_29	COG	COG1373	Predicted ATPase, AAA+ superfamily	NA
UHGV-0009389_29	Structural annotation	PF13635, PF13173, MF_01158, NF001626, COG1373	NA	NA
UHGV-0009389_30	PHROG	phrog_15594	NA	unknown function
UHGV-0009389_30	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0009389_32	PHROG	phrog_13589	NA	unknown function
UHGV-0009389_32	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0009389_32	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0009389_34	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0009389_34	UniRef90	UniRef90_A0A0U5PM31	Chromosome partition protein Smc	NA
UHGV-0009389_34	eggNOG-mapper	293826.Amet_4019	tape measure	NA
UHGV-0009389_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0009389_34	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0009389_35	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0009389_35	UniRef90	UniRef90_A0A316QIG8	Gp58 domain-containing protein	NA
UHGV-0009389_35	eggNOG-mapper	1121289.JHVL01000007_gene2741	NA	NA
UHGV-0009389_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0009389_35	COG	COG4926	Phage-related protein	NA
UHGV-0009389_35	Structural annotation	PF14594, MF_01370, TIGR01665, COG4926	NA	NA
UHGV-0009389_36	Structural annotation	PF07761	NA	NA
UHGV-0009389_37	PHROG	phrog_21233	NA	unknown function
UHGV-0009389_37	UniRef90	UniRef90_R5GYT0	Toxin secretion/phage lysis holin	NA
UHGV-0009389_37	eggNOG-mapper	411460.RUMTOR_00489	Bacteriophage holin family	NA
UHGV-0009389_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0009389_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0009389_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0009389_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0009389_38	PHROG	phrog_20388	endolysin	lysis
UHGV-0009389_38	UniRef90	UniRef90_A0A1C6D6B1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0009389_38	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0009389_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0009389_38	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0009389_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0009389_38	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0009389_39	eggNOG-mapper	1120978.KB894081_gene76	NA	NA
UHGV-0009389_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0009389_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0009389_40	UniRef90	UniRef90_B0N9S1	Resolvase, N-terminal domain protein	NA
UHGV-0009389_40	eggNOG-mapper	411468.CLOSCI_00183	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0009389_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0009389_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0009389_40	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0009389_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0009389_40	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0009389_41	PHROG	phrog_7701	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0009389_41	UniRef90	UniRef90_UPI001AA1C208	integrase	NA
UHGV-0009389_41	eggNOG-mapper	478749.BRYFOR_09688	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0009389_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0009389_41	Structural annotation	PF07508	NA	NA
UHGV-0009389_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0009389_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0009389_42	UniRef90	UniRef90_G8QX43	Site-specific recombinase, DNA invertase Pin	NA
UHGV-0009389_42	eggNOG-mapper	158190.SpiGrapes_2876	Site-specific recombinase, DNA invertase Pin	NA
UHGV-0009389_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0009389_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0009389_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0009389_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0009389_42	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA