UHGV-0009394

Genome information

Genome length 41,200 bps

CDS count 60

Completeness 96.89% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0009394
vOTU ID	vOTU-078275
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Nepal_MoBio_Fiber-Hadza-Nepal_H_9_THA1076JZ__NODE_69_length_233941_cov_10.983760_1
BioSample	SAMEA4969198
Country	Nepal
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.51
Jumbo phage	No

Genome content
Genome length	41,200 bps
GC content	42.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.77%
Average CDS length	640.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0009394_1	PHROG	phrog_10059	NA	unknown function
UHGV-0009394_1	UniRef90	UniRef90_A0A839JXV0	Ig domain-containing protein	NA
UHGV-0009394_1	eggNOG-mapper	1235790.C805_02386	domain, Protein	NA
UHGV-0009394_1	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0009394_1	COG	COG5492	NA	NA
UHGV-0009394_1	Structural annotation	PF02368, PF07233, NF005261, COG5492	NA	NA
UHGV-0009394_2	PHROG	phrog_87	metallo-protease	other
UHGV-0009394_2	UniRef90	UniRef90_UPI0005B2BE6E	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0009394_2	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0009394_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0009394_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0009394_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0009394_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0009394_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0009394_3	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0009394_3	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0009394_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0009394_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0009394_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0009394_4	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0009394_4	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0009394_4	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0009394_6	PHROG	phrog_14088	NA	unknown function
UHGV-0009394_6	UniRef90	UniRef90_M9LIB6	Membrane carboxypeptidase	NA
UHGV-0009394_6	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0009394_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0009394_7	UniRef90	UniRef90_A0A415ZXZ0	NA	NA
UHGV-0009394_7	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0009394_7	Structural annotation	PF06573	NA	NA
UHGV-0009394_9	Structural annotation	PF12750	NA	NA
UHGV-0009394_12	PHROG	phrog_674	NA	unknown function
UHGV-0009394_12	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0009394_12	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0009394_12	Pfam	PF07083	NA	DUF1351
UHGV-0009394_12	Structural annotation	PF07083	NA	NA
UHGV-0009394_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0009394_13	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0009394_13	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0009394_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0009394_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0009394_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0009394_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0009394_14	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0009394_15	PHROG	phrog_7566	NA	unknown function
UHGV-0009394_15	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0009394_15	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0009394_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0009394_17	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0009394_17	UniRef90	UniRef90_UPI000C78E8B2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0009394_17	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0009394_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0009394_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0009394_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0009394_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0009394_18	UniRef90	UniRef90_UPI001C03418C	conserved phage C-terminal domain-containing protein	NA
UHGV-0009394_18	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0009394_18	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0009394_22	eggNOG-mapper	397288.C806_00101	NA	NA
UHGV-0009394_23	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0009394_24	PHROG	phrog_7711	NA	unknown function
UHGV-0009394_24	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0009394_24	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0009394_25	PHROG	phrog_8684	NA	unknown function
UHGV-0009394_25	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-0009394_25	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0009394_25	Pfam	PF09643	YopX protein	YopX
UHGV-0009394_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0009394_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0009394_27	PHROG	phrog_20593	NA	unknown function
UHGV-0009394_28	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0009394_28	UniRef90	UniRef90_A0A173RDU7	HNH endonuclease	NA
UHGV-0009394_28	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0009394_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0009394_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0009394_28	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0009394_29	PHROG	phrog_874	NA	unknown function
UHGV-0009394_29	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0009394_29	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0009394_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0009394_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0009394_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0009394_31	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0009394_31	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0009394_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0009394_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0009394_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0009394_31	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0009394_32	eggNOG-mapper	1131462.DCF50_p1314	NA	NA
UHGV-0009394_33	PHROG	phrog_25176	NA	unknown function
UHGV-0009394_33	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-0009394_35	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0009394_36	UniRef90	UniRef90_A0A1I0M210	RNase LS, toxin	NA
UHGV-0009394_36	eggNOG-mapper	879212.DespoDRAFT_00948	Toxic component of a type II toxin-antitoxin (TA) system. A stable (half-life 27.6 minutes) endoribonuclease that in the absence of cognate antitoxin RnlB causes generalized RNA degradation. Degrades late enterobacteria phage T4 mRNAs, protecting the host against T4 reproduction. Activity is inhibited by cognate antitoxin RnlB and by enterobacteria phage T4 protein Dmd. Targets cyaA mRNA	NA
UHGV-0009394_36	Pfam	PF19417	RNase LS, bacterial toxin N-terminal	RnlA_toxin_N
UHGV-0009394_36	Pfam	PF15935	RNase LS, bacterial toxin	RnlA_toxin
UHGV-0009394_36	Pfam	PF19034	RNase LS, bacterial toxin DBD domain	RnlA-toxin_DBD
UHGV-0009394_36	Structural annotation	PF18869, PF19417, PF15935, COG3212	NA	NA
UHGV-0009394_37	PHROG	phrog_22343	NA	unknown function
UHGV-0009394_37	UniRef90	UniRef90_A0A1I0M068	Antitoxin to toxin RNase LS or RnlA	NA
UHGV-0009394_37	Pfam	PF15933	Antitoxin to bacterial toxin RNase LS or RnlA	RnlB_antitoxin
UHGV-0009394_37	Structural annotation	PF15933	NA	NA
UHGV-0009394_38	PHROG	phrog_33130	NA	unknown function
UHGV-0009394_38	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0009394_38	Structural annotation	PF10922	NA	NA
UHGV-0009394_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0009394_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0009394_40	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0009394_40	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0009394_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0009394_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0009394_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0009394_40	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0009394_41	PHROG	phrog_1233	NA	unknown function
UHGV-0009394_41	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0009394_41	Structural annotation	PF13058	NA	NA
UHGV-0009394_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0009394_42	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0009394_42	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0009394_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0009394_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0009394_43	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0009394_43	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0009394_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0009394_43	Structural annotation	PF11114	NA	NA
UHGV-0009394_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0009394_44	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0009394_44	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0009394_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0009394_44	COG	COG2369	NA	NA
UHGV-0009394_44	Structural annotation	PF06152	NA	NA
UHGV-0009394_45	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0009394_46	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0009394_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0009394_47	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0009394_47	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0009394_47	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0009394_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0009394_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0009394_48	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0009394_49	PHROG	phrog_3366	NA	unknown function
UHGV-0009394_49	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0009394_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0009394_50	PHROG	phrog_3266	tail completion	connector
UHGV-0009394_50	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0009394_50	Structural annotation	PF12691	NA	NA
UHGV-0009394_51	PHROG	phrog_3099	NA	unknown function
UHGV-0009394_51	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0009394_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0009394_52	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0009394_52	Structural annotation	PF10666	NA	NA
UHGV-0009394_53	PHROG	phrog_706	NA	unknown function
UHGV-0009394_53	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0009394_53	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0009394_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0009394_53	Structural annotation	PF06854	NA	NA
UHGV-0009394_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0009394_54	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0009394_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0009394_55	PHROG	phrog_1194	NA	unknown function
UHGV-0009394_55	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0009394_55	Pfam	PF20458	NA	DUF6711
UHGV-0009394_55	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0009394_56	PHROG	phrog_18190	NA	unknown function
UHGV-0009394_56	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0009394_56	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0009394_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0009394_56	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0009394_57	PHROG	phrog_2566	NA	unknown function
UHGV-0009394_57	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0009394_58	PHROG	phrog_17196	kinase	other
UHGV-0009394_58	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-0009394_58	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0009394_59	PHROG	phrog_4105	NA	unknown function
UHGV-0009394_59	eggNOG-mapper	521003.COLINT_02361	NA	NA
UHGV-0009394_60	PHROG	phrog_443	holin	lysis
UHGV-0009394_60	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0009394_60	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0009394_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0009394_60	Structural annotation	PF16945	NA	NA