UHGV-0009402

Genome information

Genome length 30,231 bps

CDS count 42

Completeness 61.94% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0009402
vOTU ID	vOTU-033860
vOTU representative	Yes
Source dataset	Hadza
Original genome ID	Hadza_MoBio_hadza-A-D_A_22_1120__NODE_2569_length_30231_cov_34.446342
BioSample	SAMEA4765580
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.72
Jumbo phage	No

Genome content
Genome length	30,231 bps
GC content	55.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.27%
Average CDS length	682.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0009402_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0009402_1	PHROG	phrog_435	endolysin	lysis
UHGV-0009402_1	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0009402_1	eggNOG-mapper	994573.T472_0211265	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0009402_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0009402_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-0009402_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0009402_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0009402_2	Structural annotation	PF09682	NA	NA
UHGV-0009402_3	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-0009402_4	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0009402_4	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0009402_4	Structural annotation	PF13306	NA	NA
UHGV-0009402_5	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0009402_5	PHROG	phrog_819	tail protein	tail
UHGV-0009402_5	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0009402_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0009402_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0009402_6	UniRef90	UniRef90_UPI0006882B17	C39 family peptidase	NA
UHGV-0009402_6	eggNOG-mapper	509191.AEDB02000018_gene213	Peptidase_C39 like family	NA
UHGV-0009402_6	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0009402_7	PHROG	phrog_4105	NA	unknown function
UHGV-0009402_7	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0009402_7	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0009402_10	Structural annotation	PF21722	NA	NA
UHGV-0009402_11	KOfam	K16629	COL21A; collagen type XXI alpha	NA
UHGV-0009402_11	PHROG	phrog_819	tail protein	tail
UHGV-0009402_11	eggNOG-mapper	1121363.KB902204_gene1239	domain, Protein	NA
UHGV-0009402_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0009402_11	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0009402_12	Structural annotation	PF21683	NA	NA
UHGV-0009402_13	Structural annotation	PF20377	NA	NA
UHGV-0009402_14	PHROG	phrog_6616	tail protein	tail
UHGV-0009402_14	eggNOG-mapper	445972.ANACOL_01865	NA	NA
UHGV-0009402_14	Structural annotation	PF07902, NF033848, COG3500	NA	NA
UHGV-0009402_15	PHROG	phrog_1194	NA	unknown function
UHGV-0009402_15	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0009402_15	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0009402_15	Pfam	PF20458	NA	DUF6711
UHGV-0009402_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0009402_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0009402_16	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0009402_16	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0009402_16	COG	COG1511	NA	NA
UHGV-0009402_16	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0009402_17	PHROG	phrog_14275	NA	unknown function
UHGV-0009402_17	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0009402_17	Structural annotation	PF02883, MF_00791, NF003967, COG2967	NA	NA
UHGV-0009402_18	PHROG	phrog_706	NA	unknown function
UHGV-0009402_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0009402_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0009402_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0009402_18	Structural annotation	PF06854	NA	NA
UHGV-0009402_19	PHROG	phrog_11299	NA	unknown function
UHGV-0009402_19	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0009402_19	Structural annotation	PF10666	NA	NA
UHGV-0009402_20	PHROG	phrog_3099	NA	unknown function
UHGV-0009402_20	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0009402_20	Structural annotation	TIGR02126	NA	NA
UHGV-0009402_21	PHROG	phrog_3266	tail completion	connector
UHGV-0009402_21	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0009402_21	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0009402_21	Structural annotation	PF12691	NA	NA
UHGV-0009402_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0009402_22	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0009402_22	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0009402_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0009402_22	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0009402_23	PHROG	phrog_3366	NA	unknown function
UHGV-0009402_23	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0009402_23	Pfam	PF20536	NA	DUF6751
UHGV-0009402_23	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0009402_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0009402_24	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0009402_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0009402_25	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0009402_25	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0009402_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0009402_25	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0009402_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0009402_26	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0009402_26	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0009402_26	Structural annotation	PF02924	NA	NA
UHGV-0009402_27	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0009402_27	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0009402_27	Structural annotation	PF06810	NA	NA
UHGV-0009402_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0009402_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0009402_29	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0009402_29	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0009402_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0009402_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0009402_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0009402_30	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0009402_30	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0009402_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0009402_30	COG	COG2369	NA	NA
UHGV-0009402_30	Structural annotation	PF06152	NA	NA
UHGV-0009402_31	PHROG	phrog_8680	NA	unknown function
UHGV-0009402_31	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0009402_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0009402_31	Pfam	PF14386	NA	DUF4417
UHGV-0009402_31	Structural annotation	PF14386	NA	NA
UHGV-0009402_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0009402_33	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0009402_33	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0009402_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0009402_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0009402_34	PHROG	phrog_10250	NA	unknown function
UHGV-0009402_34	UniRef90	UniRef90_A0A8J6MB41	PBSX family phage terminase large subunit	NA
UHGV-0009402_34	eggNOG-mapper	1232443.BAIA02000078_gene37	Terminase-like family	NA
UHGV-0009402_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0009402_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0009402_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0009402_34	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0009402_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0009402_35	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0009402_35	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0009402_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0009402_35	Structural annotation	PF16677	NA	NA
UHGV-0009402_41	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0009402_41	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA